PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: GO term
Identifier: GO:0080155
Description: regulation of double fertilization forming a zygote and endosperm

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_8	2	CH_aly_164	3	4	0.00000526082
Arabidopsis lyrata	scaffold_8	3	CH_aly_195	3	4	0.00000526082
Beta vulgaris	Bvchr3_un.sca001	2	CH_bvu_282	2	2	0.000579374
Beta vulgaris	Bvchr3_un.sca001	3	CH_bvu_338	2	2	0.000579374
Brassica rapa	A06	2	CH_bra_105	3	3	0.00000301394
Brassica rapa	A06	3	CH_bra_128	3	3	0.00000301394
Capsella rubella	scaffold_8	2	CH_cru_152	3	3	0.00000192245
Capsella rubella	scaffold_8	3	CH_cru_179	3	3	0.00000249919
Solanum lycopersicum	ch11	2	CH_sly_471	3	43	0.000607628
Solanum lycopersicum	ch11	3	CH_sly_613	3	43	0.000607628
Thellungiella parvula	ch5-1	2	CH_tpa_104	3	5	0.0000344578
Thellungiella parvula	ch5-1	3	CH_tpa_127	3	5	0.0000344578

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V