PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	1	CH_ath_360	2	2	0.000892804
Arabidopsis thaliana	5	2	CH_ath_437	2	2	0.000892804
Arabidopsis thaliana	5	7	CH_ath_39	2	2	0.000954138
Arabidopsis thaliana	5	8	CH_ath_40	2	2	0.000954138
Cucumis melo	CM3.5_scaffold00029	1	CH_cme_180	2	3	0.000459277
Cucumis melo	CM3.5_scaffold00029	2	CH_cme_225	2	3	0.000459277
Cucumis melo	CM3.5_scaffold00029	3	CH_cme_123	3	3	0.000000175787
Eucalyptus grandis	scaffold_10	1	CH_egr_619	2	2	0.000876399
Eucalyptus grandis	scaffold_10	2	CH_egr_787	2	2	0.000876399
Glycine max	Gm20	1	CH_gma_123	3	3	0.000000114998
Glycine max	Gm20	2	CH_gma_142	3	3	0.000000114998
Glycine max	Gm20	3	CH_gma_208	3	3	0.000000451779
Lotus japonicus	chr5	1	CH_lja_6	4	4	0.000000000000911579
Lotus japonicus	chr5	2	CH_lja_6	4	4	0.000000000000911579
Lotus japonicus	chr5	3	CH_lja_11	4	4	0.00000000000455789
Malus domestica	1	1	CH_mdo_2	7	7	2.61491e-21
Malus domestica	1	2	CH_mdo_1	7	7	2.61491e-21
Malus domestica	1	3	CH_mdo_1	7	7	8.71636e-21
Medicago truncatula	chr1	2	CH_mtr_38	6	8	1.43819e-18
Medicago truncatula	chr1	3	CH_mtr_59	6	8	7.90965e-18
Solanum lycopersicum	ch05	1	CH_sly_378	2	2	0.000344244
Solanum lycopersicum	ch05	2	CH_sly_419	2	2	0.000344244
Solanum tuberosum	chr05	1	CH_stu_452	2	2	0.000341588
Solanum tuberosum	chr05	2	CH_stu_520	2	2	0.000341588
Solanum tuberosum	chr05	3	CH_stu_770	2	2	0.000853971

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V