PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_6	3	CH_aly_17	10	11	4.37592e-18
Arabidopsis lyrata	scaffold_7	3	CH_aly_45	7	7	0.00000000000315807
Arabidopsis lyrata	scaffold_6	6	CH_aly_10	10	11	4.37592e-18
Arabidopsis lyrata	scaffold_7	9	CH_aly_6	5	6	0.00000033792
Arabidopsis thaliana	5	3	CH_ath_164	5	6	0.00000024336
Brassica rapa	A03	3	CH_bra_126	5	7	0.0000021694
Brassica rapa	A08	3	CH_bra_176	4	4	0.0000218577
Capsella rubella	scaffold_6	3	CH_cru_41	8	8	0.0000000000000545513
Capsella rubella	scaffold_7	3	CH_cru_287	4	5	0.000197602
Capsella rubella	scaffold_6	6	CH_cru_70	10	97	0.000015267
Fragaria vesca	LG6	3	CH_fve_65	7	9	0.0000000000285114
Lotus japonicus	chr5	3	CH_lja_142	4	10	0.000173627
Medicago truncatula	chr1	3	CH_mtr_874	3	3	0.000910541
Oryza sativa ssp. japonica	3	3	CH_osa_207	4	4	0.00000175015
Physcomitrella patens	scaffold_17	3	CH_ppa_38	8	48	0.00000464976
Prunus persica	scaffold_5	3	CH_ppe_299	4	4	0.0000167358
Ricinus communis	29838	3	CH_rco_59	7	10	0.000000000704902
Ricinus communis	29838	6	CH_rco_30	10	54	0.0000000220668
Solanum tuberosum	chr01	3	CH_stu_234	7	11	0.000000000528167
Solanum tuberosum	chr01	3	CH_stu_126	8	9	0.0000000000000659909
Solanum tuberosum	chr07	3	CH_stu_185	7	8	0.0000000000129585
Solanum tuberosum	chr01	6	CH_stu_158	10	112	0.00000552996

GO term	Description	Number of clusters
GO:0030544	Hsp70 protein binding	2
GO:0051879	Hsp90 protein binding	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V