PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr9	1	CH_cla_99	4	4	0.0000106804
Eucalyptus grandis	scaffold_2	5	CH_egr_276	11	168	0.000436378
Eucalyptus grandis	scaffold_1	6	CH_egr_227	10	62	0.000000778065
Fragaria vesca	scf0513158	5	CH_fve_72	13	291	0.000646469
Gossypium raimondii	Chr09	1	CH_gra_170	4	4	0.0000290076
Gossypium raimondii	Chr10	1	CH_gra_260	4	6	0.000431471
Gossypium raimondii	Chr10	3	CH_gra_206	5	6	0.000010504
Oryza sativa ssp. japonica	5	4	CH_osa_83	11	146	0.000000836103
Oryza sativa ssp. japonica	5	5	CH_osa_108	11	146	0.00000984484
Solanum tuberosum	chr03	1	CH_stu_200	5	5	0.0000000482164
Solanum tuberosum	chr06	1	CH_stu_314	4	4	0.0000115218

GO term	Description	Number of clusters
GO:0003993	acid phosphatase activity	111
GO:0004331	fructose-2,6-bisphosphate 2-phosphatase activity	2
GO:0004441	inositol-1,4-bisphosphate 1-phosphatase activity	7
GO:0004647	phosphoserine phosphatase activity	8
GO:0004721	phosphoprotein phosphatase activity	5
GO:0004722	protein serine/threonine phosphatase activity	17
GO:0004725	protein tyrosine phosphatase activity	2
GO:0008195	phosphatidate phosphatase activity	9
GO:0008253	5'-nucleotidase activity	4
GO:0008441	3'(2'),5'-bisphosphate nucleotidase activity	11
GO:0008934	inositol monophosphate 1-phosphatase activity	2
GO:0016312	inositol bisphosphate phosphatase activity	4
GO:0033550	MAP kinase tyrosine phosphatase activity	2
GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	10
GO:0043874	acireductone synthase activity	8
GO:0050307	sucrose-phosphate phosphatase activity	2
GO:0052642	lysophosphatidic acid phosphatase activity	12
GO:0052731	phosphocholine phosphatase activity	38

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V