PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	2	CH_ath_368	2	2	0.000357122
Arabidopsis thaliana	3	3	CH_ath_391	2	2	0.000357122
Capsella rubella	scaffold_5	2	CH_cru_306	2	2	0.000457945
Capsella rubella	scaffold_5	3	CH_cru_346	2	2	0.000457945
Eucalyptus grandis	scaffold_11	2	CH_egr_95	6	7	7.50817e-19
Eucalyptus grandis	scaffold_11	3	CH_egr_111	6	7	7.50817e-19
Glycine max	Gm06	2	CH_gma_155	3	3	0.000000246425
Glycine max	Gm06	3	CH_gma_187	3	3	0.000000246425
Lotus japonicus	chr1	2	CH_lja_152	2	2	0.000403361
Lotus japonicus	chr1	3	CH_lja_190	2	2	0.000403361
Malus domestica	6	2	CH_mdo_262	2	2	0.000461585
Malus domestica	6	3	CH_mdo_356	2	2	0.000461585
Solanum tuberosum	chr06	2	CH_stu_526	2	2	0.000341588
Solanum tuberosum	chr06	3	CH_stu_699	2	2	0.000341588
Vitis vinifera	chr17	2	CH_vvi_132	4	18	0.0000000585093

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V