PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	3	CH_aly_229	3	4	0.000036817
Arabidopsis thaliana	3	1	CH_ath_261	3	4	0.000165034
Arabidopsis thaliana	3	2	CH_ath_308	3	4	0.000165034
Arabidopsis thaliana	3	3	CH_ath_350	3	4	0.000194102
Capsella rubella	scaffold_3	1	CH_cru_157	3	5	0.0000593691
Capsella rubella	scaffold_3	2	CH_cru_227	3	5	0.0000845912
Capsella rubella	scaffold_3	3	CH_cru_281	3	5	0.000154568
Carica papaya	supercontig_120	3	CH_cpa_155	4	21	0.0000251167
Citrullus lanatus	Chr5	3	CH_cla_228	3	6	0.000177071
Citrullus lanatus	Chr6	3	CH_cla_142	3	3	0.00000886744
Cucumis melo	CM3.5_scaffold00042	3	CH_cme_168	3	3	0.00000851686
Glycine max	Gm04	3	CH_gma_331	3	3	0.0000271971
Lotus japonicus	chr5	3	CH_lja_170	3	9	0.000258587
Thellungiella parvula	ch3-1	1	CH_tpa_81	3	5	0.0000344578
Thellungiella parvula	ch3-1	2	CH_tpa_109	3	5	0.0000530057
Thellungiella parvula	ch3-1	3	CH_tpa_158	3	5	0.0000917024
Vitis vinifera	chr5	3	CH_vvi_278	3	3	0.0000130673

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V