PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006720
Description: isoprenoid metabolic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	5	CH_aly_68	11	204	0.000209147
Capsella rubella	scaffold_3	5	CH_cru_33	15	185	0.0000000324506
Capsella rubella	scaffold_3	6	CH_cru_42	15	185	0.000000038539
Oryza sativa ssp. japonica	4	1	CH_osa_222	5	26	0.0000154453
Oryza sativa ssp. japonica	4	2	CH_osa_171	6	26	0.00000142222
Oryza sativa ssp. japonica	4	3	CH_osa_204	6	26	0.0000015652
Thellungiella parvula	ch3-1	2	CH_tpa_100	5	9	0.0000171834
Thellungiella parvula	ch3-1	3	CH_tpa_117	5	9	0.0000177991

Available child term results

GO term	Description	Number of clusters
GO:0006721	terpenoid metabolic process	5
GO:0006722	triterpenoid metabolic process	2
GO:0008299	isoprenoid biosynthetic process	11
GO:0010028	xanthophyll cycle	2
GO:0010241	ent-kaurene oxidation to kaurenoic acid	3
GO:0010263	tricyclic triterpenoid biosynthetic process	5
GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2
GO:0010371	regulation of gibberellin biosynthetic process	2
GO:0010373	negative regulation of gibberellin biosynthetic process	2
GO:0010683	tricyclic triterpenoid metabolic process	6
GO:0010686	tetracyclic triterpenoid biosynthetic process	12
GO:0016099	monoterpenoid biosynthetic process	2
GO:0016101	diterpenoid metabolic process	3
GO:0016103	diterpenoid catabolic process	4
GO:0016114	terpenoid biosynthetic process	2
GO:0016117	carotenoid biosynthetic process	3
GO:0016121	carotene catabolic process	1
GO:0016124	xanthophyll catabolic process	16
GO:0016487	farnesol metabolic process	2
GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9
GO:0019408	dolichol biosynthetic process	10
GO:0019745	pentacyclic triterpenoid biosynthetic process	8
GO:0042214	terpene metabolic process	2
GO:0043693	monoterpene biosynthetic process	2
GO:0045337	farnesyl diphosphate biosynthetic process	6
GO:0046246	terpene biosynthetic process	4
GO:0046345	abscisic acid catabolic process	28
GO:0051762	sesquiterpene biosynthetic process	2
GO:0080003	thalianol metabolic process	16
GO:0090359	negative regulation of abscisic acid biosynthetic process	6
GO:1901601	strigolactone biosynthetic process	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V