PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0005215
Description: transporter activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00203	1	CH_atr_163	6	8	0.000115597
Amborella trichopoda	scaffold00203	2	CH_atr_203	6	8	0.000371544
Amborella trichopoda	scaffold00203	3	CH_atr_221	7	9	0.000046043
Arabidopsis thaliana	1	1	CH_ath_343	11	33	0.000800542
Citrullus lanatus	Chr4	1	CH_cla_155	6	8	0.000232301
Citrullus lanatus	Chr4	2	CH_cla_261	6	8	0.0008602
Citrullus lanatus	mitochondrial	10	CH_cla_4	11	55	0.000198739
Cucumis melo	CM3.5_scaffold00006	1	CH_cme_82	7	8	0.00000110671
Cucumis melo	CM3.5_scaffold00022	1	CH_cme_103	7	10	0.0000158978
Cucumis melo	CM3.5_scaffold00006	2	CH_cme_108	7	8	0.00000491568
Cucumis melo	CM3.5_scaffold00022	2	CH_cme_143	7	10	0.0000698763
Cucumis melo	CM3.5_scaffold00006	4	CH_cme_40	10	40	0.000889189
Cucumis melo	CM3.5_scaffold00006	6	CH_cme_54	12	40	0.000189145
Fragaria vesca	LG5	2	CH_fve_311	12	52	0.000543059
Fragaria vesca	LG5	4	CH_fve_62	10	40	0.000643515
Fragaria vesca	LG5	5	CH_fve_59	18	118	0.000184581
Lotus japonicus	chr4	1	CH_lja_31	9	23	0.000000697932
Lotus japonicus	chr1	2	CH_lja_166	11	64	0.000724395
Lotus japonicus	chr4	2	CH_lja_62	9	23	0.00000463463
Lotus japonicus	chr4	4	CH_lja_4	10	33	0.00000102568
Lotus japonicus	chr1	5	CH_lja_24	11	64	0.000724395
Lotus japonicus	chr4	5	CH_lja_9	10	33	0.00000821704
Lotus japonicus	chr4	6	CH_lja_23	10	33	0.0000448516
Malus domestica	7	1	CH_mdo_262	5	6	0.0009825
Medicago truncatula	chr7	1	CH_mtr_149	10	17	0.00000000125253
Medicago truncatula	chr7	2	CH_mtr_205	10	17	0.00000000844624
Medicago truncatula	chr4	3	CH_mtr_782	13	70	0.000440686
Medicago truncatula	chr7	5	CH_mtr_94	10	17	0.00000000844624
Medicago truncatula	chr4	6	CH_mtr_124	10	17	0.0000000441943
Medicago truncatula	chr4	6	CH_mtr_258	13	70	0.000440686
Oryza sativa ssp. japonica	1	1	CH_osa_54	10	10	0.00000000000010243
Oryza sativa ssp. japonica	6	1	CH_osa_280	5	5	0.0000767655
Oryza sativa ssp. japonica	1	2	CH_osa_53	10	10	0.000000000000332823
Oryza sativa ssp. japonica	6	2	CH_osa_315	5	5	0.000138172
Oryza sativa ssp. japonica	1	4	CH_osa_38	10	10	0.00000000000010243
Oryza sativa ssp. japonica	1	5	CH_osa_41	10	10	0.000000000000332823
Oryza sativa ssp. japonica	mitochondrial	10	CH_osa_30	12	74	0.00000875093
Populus trichocarpa	Chr09	1	CH_ptr_185	7	7	0.00000126384
Populus trichocarpa	Chr09	2	CH_ptr_231	7	7	0.00000376227
Populus trichocarpa	Chr13	4	CH_ptr_80	11	25	0.00000367038
Populus trichocarpa	Chr13	5	CH_ptr_93	11	25	0.0000190416
Populus trichocarpa	Chr13	6	CH_ptr_124	11	25	0.0000641655
Ricinus communis	29822	1	CH_rco_122	7	9	0.0000170335
Solanum lycopersicum	ch12	1	CH_sly_167	8	8	0.000000204992
Solanum lycopersicum	ch12	2	CH_sly_174	8	8	0.000000282087
Solanum tuberosum	chr05	2	CH_stu_79	13	14	0.0000000000000234211
Solanum tuberosum	chr11	4	CH_stu_123	10	24	0.0000113411
Solanum tuberosum	chr05	5	CH_stu_55	13	14	0.0000000000000234211
Solanum tuberosum	chr11	5	CH_stu_143	10	24	0.0000642548
Solanum tuberosum	chr11	6	CH_stu_211	10	24	0.000359879
Vitis vinifera	chr10	4	CH_vvi_79	10	23	0.0000118081
Zea mays	1	1	CH_zma_191	5	5	0.000296608
Zea mays	6	1	CH_zma_192	5	5	0.000296608
Zea mays	1	2	CH_zma_232	5	5	0.000661766
Zea mays	6	2	CH_zma_233	5	5	0.000661766

Available child term results

GO term	Description	Number of clusters
GO:0000064	L-ornithine transmembrane transporter activity	2
GO:0001409	guanine nucleotide transmembrane transporter activity	14
GO:0004008	copper-exporting ATPase activity	1
GO:0004012	phospholipid-translocating ATPase activity	20
GO:0004129	cytochrome-c oxidase activity	13
GO:0005216	ion channel activity	29
GO:0005221	intracellular cyclic nucleotide activated cation channel activity	1
GO:0005222	intracellular cAMP activated cation channel activity	12
GO:0005227	calcium activated cation channel activity	8
GO:0005230	extracellular ligand-gated ion channel activity	3
GO:0005234	extracellular-glutamate-gated ion channel activity	149
GO:0005247	voltage-gated chloride channel activity	9
GO:0005249	voltage-gated potassium channel activity	5
GO:0005253	anion channel activity	2
GO:0005267	potassium channel activity	3
GO:0005272	sodium channel activity	18
GO:0005310	dicarboxylic acid transmembrane transporter activity	2
GO:0005315	inorganic phosphate transmembrane transporter activity	9
GO:0005337	nucleoside transmembrane transporter activity	18
GO:0005344	oxygen transporter activity	2
GO:0005345	purine nucleobase transmembrane transporter activity	26
GO:0005351	sugar:hydrogen symporter activity	13
GO:0005353	fructose transmembrane transporter activity	2
GO:0005375	copper ion transmembrane transporter activity	17
GO:0005385	zinc ion transmembrane transporter activity	7
GO:0005388	calcium-transporting ATPase activity	31
GO:0005427	proton-dependent oligopeptide secondary active transmembrane transporter activity	3
GO:0005432	calcium:sodium antiporter activity	5
GO:0005451	monovalent cation:hydrogen antiporter activity	3
GO:0005452	inorganic anion exchanger activity	1
GO:0005457	GDP-fucose transmembrane transporter activity	2
GO:0005458	GDP-mannose transmembrane transporter activity	2
GO:0008121	ubiquinol-cytochrome-c reductase activity	4
GO:0008262	importin-alpha export receptor activity	3
GO:0008271	secondary active sulfate transmembrane transporter activity	14
GO:0008308	voltage-gated anion channel activity	1
GO:0008324	cation transmembrane transporter activity	17
GO:0008381	mechanically-gated ion channel activity	12
GO:0008493	tetracycline transporter activity	3
GO:0008508	bile acid:sodium symporter activity	9
GO:0008509	anion transmembrane transporter activity	5
GO:0008514	organic anion transmembrane transporter activity	3
GO:0008515	sucrose transmembrane transporter activity	11
GO:0008519	ammonium transmembrane transporter activity	6
GO:0008526	phosphatidylinositol transporter activity	1
GO:0008551	cadmium-exporting ATPase activity	3
GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism	10
GO:0008559	xenobiotic-transporting ATPase activity	6
GO:0008565	protein transporter activity	1
GO:0009671	nitrate:hydrogen symporter activity	2
GO:0009673	low affinity phosphate transmembrane transporter activity	4
GO:0009674	potassium:sodium symporter activity	18
GO:0009678	hydrogen-translocating pyrophosphatase activity	10
GO:0010174	nucleoside transmembrane transporter activity, against a concentration gradient	4
GO:0010542	nitrate efflux transmembrane transporter activity	26
GO:0015075	ion transmembrane transporter activity	6
GO:0015077	monovalent inorganic cation transmembrane transporter activity	3
GO:0015078	hydrogen ion transmembrane transporter activity	19
GO:0015079	potassium ion transmembrane transporter activity	8
GO:0015087	cobalt ion transmembrane transporter activity	2
GO:0015088	copper uptake transmembrane transporter activity	5
GO:0015093	ferrous iron transmembrane transporter activity	1
GO:0015095	magnesium ion transmembrane transporter activity	24
GO:0015098	molybdate ion transmembrane transporter activity	7
GO:0015099	nickel cation transmembrane transporter activity	3
GO:0015105	arsenite transmembrane transporter activity	9
GO:0015112	nitrate transmembrane transporter activity	7
GO:0015113	nitrite transmembrane transporter activity	2
GO:0015114	phosphate ion transmembrane transporter activity	3
GO:0015115	silicate transmembrane transporter activity	4
GO:0015116	sulfate transmembrane transporter activity	11
GO:0015137	citrate transmembrane transporter activity	13
GO:0015140	malate transmembrane transporter activity	4
GO:0015144	carbohydrate transmembrane transporter activity	4
GO:0015145	monosaccharide transmembrane transporter activity	2
GO:0015152	glucose-6-phosphate transmembrane transporter activity	1
GO:0015171	amino acid transmembrane transporter activity	40
GO:0015172	acidic amino acid transmembrane transporter activity	2
GO:0015173	aromatic amino acid transmembrane transporter activity	2
GO:0015174	basic amino acid transmembrane transporter activity	4
GO:0015175	neutral amino acid transmembrane transporter activity	4
GO:0015180	L-alanine transmembrane transporter activity	6
GO:0015185	gamma-aminobutyric acid transmembrane transporter activity	13
GO:0015193	L-proline transmembrane transporter activity	15
GO:0015198	oligopeptide transporter activity	21
GO:0015199	amino-acid betaine transmembrane transporter activity	2
GO:0015203	polyamine transmembrane transporter activity	23
GO:0015204	urea transmembrane transporter activity	4
GO:0015205	nucleobase transmembrane transporter activity	2
GO:0015225	biotin transporter activity	6
GO:0015228	coenzyme A transmembrane transporter activity	2
GO:0015231	5-formyltetrahydrofolate transporter activity	2
GO:0015232	heme transporter activity	1
GO:0015238	drug transmembrane transporter activity	22
GO:0015250	water channel activity	4
GO:0015271	outward rectifier potassium channel activity	2
GO:0015291	secondary active transmembrane transporter activity	19
GO:0015295	solute:hydrogen symporter activity	16
GO:0015297	antiporter activity	1
GO:0015299	solute:hydrogen antiporter activity	72
GO:0015301	anion:anion antiporter activity	7
GO:0015326	cationic amino acid transmembrane transporter activity	6
GO:0015367	oxoglutarate:malate antiporter activity	3
GO:0015369	calcium:hydrogen antiporter activity	26
GO:0015370	solute:sodium symporter activity	6
GO:0015377	cation:chloride symporter activity	6
GO:0015385	sodium:hydrogen antiporter activity	8
GO:0015398	high affinity secondary active ammonium transmembrane transporter activity	2
GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	5
GO:0015415	phosphate ion transmembrane-transporting ATPase activity	5
GO:0015446	arsenite-transmembrane transporting ATPase activity	16
GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4
GO:0015505	uracil:cation symporter activity	33
GO:0015519	D-xylose:hydrogen symporter activity	3
GO:0015662	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6
GO:0017077	oxidative phosphorylation uncoupler activity	2
GO:0017089	glycolipid transporter activity	9
GO:0019829	cation-transporting ATPase activity	17
GO:0022804	active transmembrane transporter activity	29
GO:0022821	potassium ion antiporter activity	20
GO:0022839	ion gated channel activity	9
GO:0022857	transmembrane transporter activity	34
GO:0022890	inorganic cation transmembrane transporter activity	3
GO:0022891	substrate-specific transmembrane transporter activity	65
GO:0022892	substrate-specific transporter activity	4
GO:0034639	L-amino acid efflux transmembrane transporter activity	3
GO:0042626	ATPase activity, coupled to transmembrane movement of substances	94
GO:0042936	dipeptide transporter activity	4
GO:0046873	metal ion transmembrane transporter activity	9
GO:0046915	transition metal ion transmembrane transporter activity	2
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	1
GO:0046961	proton-transporting ATPase activity, rotational mechanism	3
GO:0051980	iron-nicotianamine transmembrane transporter activity	6
GO:0080054	low affinity nitrate transmembrane transporter activity	21
GO:0090416	nicotinate transporter activity	7
GO:0090440	abscisic acid transporter activity	6
GO:0090448	glucosinolate:hydrogen symporter activity	25
GO:1901683	arsenate ion transmembrane transporter activity	6
GO:1901974	glycerate transmembrane transporter activity	4

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V