PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004888
Description: transmembrane signaling receptor activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	2	CH_aly_30	9	14	0.0000000000007835
Arabidopsis lyrata	scaffold_8	2	CH_aly_2	27	79	1.38111e-35
Arabidopsis lyrata	scaffold_2	3	CH_aly_42	9	14	0.000000000000858631
Arabidopsis lyrata	scaffold_2	5	CH_aly_29	10	69	0.000000594148
Arabidopsis lyrata	scaffold_8	5	CH_aly_2	34	110	4.273e-44
Arabidopsis lyrata	scaffold_2	6	CH_aly_34	10	69	0.00000065593
Arabidopsis lyrata	scaffold_8	8	CH_aly_6	6	31	0.0000213283
Arabidopsis lyrata	scaffold_8	9	CH_aly_9	6	31	0.0000241817
Arabidopsis lyrata	scaffold_8	11	CH_aly_2	12	243	0.000000276603
Arabidopsis lyrata	scaffold_8	12	CH_aly_2	12	243	0.000000354954
Capsella rubella	scaffold_4	2	CH_cru_78	8	19	0.00000000096327
Capsella rubella	scaffold_5	2	CH_cru_16	13	27	7.30056e-19
Capsella rubella	scaffold_8	2	CH_cru_8	17	44	1.20484e-23
Capsella rubella	scaffold_4	3	CH_cru_90	8	19	0.00000000102127
Capsella rubella	scaffold_5	5	CH_cru_10	13	27	7.30056e-19
Capsella rubella	scaffold_8	5	CH_cru_7	17	44	1.20484e-23
Carica papaya	supercontig_8	1	CH_cpa_90	3	3	0.0000463169
Carica papaya	supercontig_2	2	CH_cpa_148	3	3	0.000129209
Carica papaya	supercontig_2	3	CH_cpa_234	3	3	0.000139686
Citrullus lanatus	Chr6	1	CH_cla_122	4	17	0.0000651509
Citrullus lanatus	Chr6	2	CH_cla_169	5	33	0.000153121
Cucumis melo	CM3.5_scaffold00014	1	CH_cme_42	5	5	0.0000000000518638
Cucumis melo	CM3.5_scaffold00014	2	CH_cme_49	5	5	0.000000000814495
Glycine max	Gm02	2	CH_gma_157	5	5	0.000000275292
Glycine max	Gm06	2	CH_gma_24	16	73	1.15964e-16
Glycine max	Gm08	2	CH_gma_292	4	4	0.0000502696
Glycine max	Gm16	2	CH_gma_12	13	19	5.19046e-21
Glycine max	Gm16	2	CH_gma_223	5	7	0.00000572846
Glycine max	Gm16	2	CH_gma_43	10	19	0.000000000000113918
Glycine max	Gm16	2	CH_gma_172	7	20	0.000000595461
Glycine max	Gm02	3	CH_gma_196	5	5	0.000000299176
Glycine max	Gm08	3	CH_gma_353	4	4	0.0000537234
Glycine max	Gm06	5	CH_gma_11	21	94	3.7478e-23
Glycine max	Gm16	5	CH_gma_13	13	19	5.19046e-21
Glycine max	Gm16	5	CH_gma_23	10	19	0.000000000000113918
Populus trichocarpa	Chr05	2	CH_ptr_158	6	7	0.0000000233442
Populus trichocarpa	Chr11	2	CH_ptr_19	21	70	1.06639e-24
Populus trichocarpa	Chr13	2	CH_ptr_61	11	22	0.0000000000000252377
Populus trichocarpa	Chr14	2	CH_ptr_134	8	17	0.00000000328209
Populus trichocarpa	Chr17	2	CH_ptr_44	13	27	2.87632e-17
Populus trichocarpa	Chr19	2	CH_ptr_74	11	26	0.000000000000269956
Populus trichocarpa	scaffold_38	2	CH_ptr_75	11	26	0.000000000000269956
Populus trichocarpa	scaffold_73	2	CH_ptr_357	6	21	0.000167249
Populus trichocarpa	Chr14	3	CH_ptr_181	8	17	0.00000000494472
Populus trichocarpa	Chr19	3	CH_ptr_92	11	26	0.000000000000475333
Populus trichocarpa	Chr11	5	CH_ptr_18	21	70	1.06639e-24
Populus trichocarpa	Chr13	5	CH_ptr_42	11	22	0.0000000000000252377
Populus trichocarpa	Chr17	5	CH_ptr_33	13	27	2.87632e-17
Populus trichocarpa	Chr19	5	CH_ptr_44	11	26	0.000000000000269956
Populus trichocarpa	scaffold_38	5	CH_ptr_45	11	26	0.000000000000269956
Populus trichocarpa	Chr19	6	CH_ptr_60	11	26	0.000000000000475333
Prunus persica	scaffold_6	2	CH_ppe_310	4	4	0.000129898
Prunus persica	scaffold_7	2	CH_ppe_87	10	24	0.0000000000646179
Prunus persica	scaffold_8	2	CH_ppe_47	15	58	0.0000000000000242835
Prunus persica	scaffold_6	3	CH_ppe_377	4	4	0.000134486
Prunus persica	scaffold_8	3	CH_ppe_62	15	58	0.0000000000000276673
Prunus persica	scaffold_2	4	CH_ppe_110	11	140	0.000402585
Prunus persica	scaffold_7	5	CH_ppe_44	10	24	0.0000000000646179
Prunus persica	scaffold_2	6	CH_ppe_103	10	57	0.00000121717

Available child term results

GO term	Description	Number of clusters
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	5
GO:0004930	G-protein coupled receptor activity	4
GO:0004965	G-protein coupled GABA receptor activity	29
GO:0004999	vasoactive intestinal polypeptide receptor activity	3
GO:0005034	osmosensor activity	2
GO:0008066	glutamate receptor activity	1
GO:0008158	hedgehog receptor activity	2
GO:0016524	latrotoxin receptor activity	3

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V