PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00002	1	CH_atr_205	2	2	0.000474215
Carica papaya	supercontig_52	1	CH_cpa_169	2	2	0.000582496
Carica papaya	supercontig_52	2	CH_cpa_208	2	2	0.000582496
Carica papaya	supercontig_52	3	CH_cpa_318	2	2	0.000582496
Eucalyptus grandis	scaffold_4	1	CH_egr_180	4	4	0.0000000000209439
Eucalyptus grandis	scaffold_4	2	CH_egr_231	4	4	0.0000000000209439
Eucalyptus grandis	scaffold_4	3	CH_egr_265	4	4	0.0000000000209439
Fragaria vesca	LG6	1	CH_fve_118	3	4	0.00000180681
Fragaria vesca	LG6	2	CH_fve_126	3	4	0.00000180681
Fragaria vesca	LG6	3	CH_fve_176	3	4	0.00000180681
Malus domestica	17	1	CH_mdo_259	2	2	0.000969328
Malus domestica	3	1	CH_mdo_258	2	2	0.000969328
Malus domestica	17	2	CH_mdo_310	2	2	0.000969328
Malus domestica	3	2	CH_mdo_309	2	2	0.000969328
Malus domestica	17	3	CH_mdo_428	2	2	0.000969328
Malus domestica	3	3	CH_mdo_427	2	2	0.000969328
Oryza sativa ssp. japonica	3	1	CH_osa_80	4	6	0.0000000000715469
Oryza sativa ssp. japonica	3	2	CH_osa_76	4	6	0.0000000000715469
Oryza sativa ssp. japonica	3	3	CH_osa_95	4	6	0.00000000014309
Prunus persica	scaffold_3	1	CH_ppe_112	4	11	0.0000000129692
Prunus persica	scaffold_3	2	CH_ppe_127	4	11	0.0000000129692
Prunus persica	scaffold_3	3	CH_ppe_157	4	11	0.0000000129692
Zea mays	1	1	CH_zma_34	4	6	0.00000000120178
Zea mays	1	2	CH_zma_32	4	6	0.00000000120178
Zea mays	1	3	CH_zma_49	4	6	0.00000000120178

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V