PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_3	1	CH_egr_303	4	4	0.000000106733
Eucalyptus grandis	scaffold_3	1	CH_egr_21	12	15	1.50404e-28
Eucalyptus grandis	scaffold_8	1	CH_egr_32	10	10	2.91482e-25
Eucalyptus grandis	scaffold_9	1	CH_egr_249	6	19	0.00000000440336
Eucalyptus grandis	scaffold_3	2	CH_egr_26	12	15	1.50404e-28
Eucalyptus grandis	scaffold_3	2	CH_egr_389	4	4	0.000000106733
Eucalyptus grandis	scaffold_8	2	CH_egr_38	10	10	2.91482e-25
Eucalyptus grandis	scaffold_9	2	CH_egr_325	6	19	0.00000000440336
Eucalyptus grandis	scaffold_3	3	CH_egr_37	12	15	2.65536e-28
Eucalyptus grandis	scaffold_3	3	CH_egr_451	4	4	0.000000126786
Eucalyptus grandis	scaffold_3	4	CH_egr_26	12	15	1.50404e-28
Eucalyptus grandis	scaffold_8	4	CH_egr_34	10	10	2.91482e-25
Eucalyptus grandis	scaffold_3	5	CH_egr_30	12	15	1.50404e-28
Eucalyptus grandis	scaffold_8	5	CH_egr_40	10	10	2.91482e-25
Eucalyptus grandis	scaffold_3	6	CH_egr_38	12	15	2.65536e-28
Oryza sativa ssp. japonica	10	3	CH_osa_370	3	6	0.000124999
Populus trichocarpa	Chr09	1	CH_ptr_55	6	7	0.0000000000000229146
Populus trichocarpa	Chr18	1	CH_ptr_49	6	6	0.0000000000000032752
Solanum lycopersicum	ch10	2	CH_sly_36	11	72	5.78348e-19
Solanum lycopersicum	ch10	5	CH_sly_31	11	72	5.78348e-19
Solanum tuberosum	chr07	4	CH_stu_21	10	14	8.23452e-27
Zea mays	1	3	CH_zma_114	4	9	0.00000150871

GO term	Description	Number of clusters
GO:0008843	endochitinase activity	4
GO:0035885	exochitinase activity	6

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V