PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	0033.scaffold00127	1	CH_bvu_154	2	2	0.0000965624
Beta vulgaris	0033.scaffold00127	2	CH_bvu_197	2	2	0.0000965624
Capsella rubella	scaffold_3	2	CH_cru_218	2	2	0.0000763242
Capsella rubella	scaffold_3	3	CH_cru_252	2	2	0.0000763242
Fragaria vesca	LG6	1	CH_fve_145	3	11	0.0000177346
Fragaria vesca	LG6	2	CH_fve_166	3	11	0.0000177346
Manihot esculenta	scaffold11998	1	CH_mes_181	2	2	0.000949127
Manihot esculenta	scaffold11998	2	CH_mes_239	2	2	0.000949127
Manihot esculenta	scaffold11998	7	CH_mes_4	2	2	0.000311883
Manihot esculenta	scaffold11998	8	CH_mes_3	2	2	0.000311883
Oryza sativa ssp. japonica	1	1	CH_osa_113	3	3	0.00000000763928
Oryza sativa ssp. japonica	1	2	CH_osa_114	3	3	0.00000000763928
Prunus persica	scaffold_6	1	CH_ppe_279	2	2	0.000216255
Prunus persica	scaffold_6	2	CH_ppe_343	2	2	0.000216255
Prunus persica	scaffold_6	3	CH_ppe_420	2	2	0.000216255
Theobroma cacao	scaffold_5	1	CH_tca_120	3	5	0.000000278813
Theobroma cacao	scaffold_5	2	CH_tca_128	3	5	0.000000278813

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V