PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_6	2	CH_aly_186	4	4	0.000013716
Arabidopsis lyrata	scaffold_6	3	CH_aly_223	4	4	0.0000259687
Beta vulgaris	Bvchr1.sca001	1	CH_bvu_33	6	6	0.0000000000321713
Beta vulgaris	Bvchr1.sca001	2	CH_bvu_45	6	6	0.000000000144055
Beta vulgaris	Bvchr1.sca001	3	CH_bvu_58	6	6	0.000000000225282
Capsella rubella	scaffold_1	1	CH_cru_236	3	3	0.000863093
Capsella rubella	scaffold_6	1	CH_cru_237	3	3	0.000863093
Carica papaya	supercontig_16	3	CH_cpa_235	4	6	0.000141644
Chlamydomonas reinhardtii	chromosome_10	3	CH_cre_45	5	12	0.0000114288
Medicago truncatula	chr1	3	CH_mtr_221	6	8	0.00000000153666
Medicago truncatula	chr3	8	CH_mtr_10	3	3	0.000299406
Medicago truncatula	chr3	9	CH_mtr_33	3	3	0.000658728

GO term	Description	Number of clusters
GO:0005680	anaphase-promoting complex	11
GO:0019005	SCF ubiquitin ligase complex	5
GO:0031461	cullin-RING ubiquitin ligase complex	13
GO:0031463	Cul3-RING ubiquitin ligase complex	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V