Motif_431 | E2Fb | Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities | | 90.00% |
Motif_372 | E2FAT | E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression | | 85.00% |
Motif_13 | E2F-varient binding site motif | A genome-wide identification of E2F-regulated genes in Arabidopsis | | 80.00% |
Motif_462 | TE2F2NTPCNA | te2f-2 found in the promoter of tobacco PCNA gene; Located between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue | | 80.00% |
Motif_593 | E2Fb; E2Fc; E2Fd; E2Ff; E2Fe; E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities | | 80.00% |
Motif_663 | E2F binding site motif; E2F/DP BS in AtCDC6 | Not Available | | 80.00% |
Motif_633 | PE2FNTRNR1A | pE2F (proximal E2F elemen) at -143bp of tobacco RNR1a promoter; E2F factors involved in gene induction at the G1/S transition of the cell cycle; Important for regulating specific RNR1a (ribonucleotide reductase large subunit) gene expression in response to UV-C irradiation | | 70.00% |
Motif_670 | E2Fb; E2Fc; E2Fd; E2Fe; E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities | | 60.00% |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 60.00% |
Motif_577 | GRAZMRAB28 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130 | | 60.00% |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | | 56.34% |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | | 55.00% |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | | 52.68% |
Matrix_275 | ZAP1 | Characterization of a zinc-dependent transcriptional activator from Arabidopsis | | 52.11% |
Motif_106 | PR2GCNT | GC element conserved in the 5' upstream regions of group 2 PR protein genes (beta-1,3-glucanase (GLN2), chitinase (CHN17, CHN50)) of tobacco | | 51.34% |
Matrix_215 | ARF1 | ARF1, a transcription factor that binds to auxin response elements | | 50.79% |
Matrix_426 | CRF1; CRF2 | Not Available | | 50.65% |
Matrix_285 | DDF1 | Not Available | | 50.02% |
Motif_619 | SITEIIBOSPCNA | Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes | | 50.00% |
Motif_621 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 50.00% |
Motif_211 | ABREMOTIFIOSRAB16B | Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other | | 50.00% |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 50.00% |
Motif_629 | L1DCPAL1 | L1 element, found in PAL1 promoter in carrot (Daucus carota), is a protoplastization (dilution) responsive element; L1 contains Box L-like sequence (ACCTACCC); see also BOXL CORE of DC PAL1 | | 50.00% |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | | 50.00% |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | | 50.00% |
Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 50.00% |
Motif_227 | WRKY43; WRKY38; WRKY26 | Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 50.00% |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | | 50.00% |
Motif_239 | MYB2 | Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 50.00% |
Motif_632 | EREGCC | GCC box in ERE (ethylene responsive element); Ethylene-responsive region of tobacco (N.t.) chitinase gene contains two copies of the GCC-box; ERF2 and ERF4 enhanced the GCC box-mediated transcription; ERF3 reduced the transcription of the reporter gene in tobacco protoplasts; Binding site of AtEBP; Pti4/5/6 proteins from tomato which belong to the ERF family activate the expression of GCC box-containing PR genes; ERF3 was found to interact with NtUBC2, a ubiquitin-conjugating enzyme; Identification of an ethylene-responsive region in the promoter of a tobacco class I chitinase gene | | 50.00% |
Motif_543 | TATCCACHVAL21 | TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response | | 50.00% |
Motif_426 | MYB58; MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | | 50.00% |
Motif_52 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 50.00% |
Motif_424 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 50.00% |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | | 50.00% |
Motif_386 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 50.00% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 50.00% |
Motif_337 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 50.00% |
Motif_501 | ELRE2PCPAL1 | One of two elicitor (ELRE) and light response elements (LRE) found in the parsley (P.c.) phenylalanine ammonia-lyase (PAL-1) gene promoter; Involved in UV light and elicitor responsiveness; Conserved in several elicitor or light-responsive genes | | 50.00% |
Motif_507 | ABASEED1 | ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif | | 50.00% |
Motif_463 | GRAZMRAB17 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab17 gene from maize; Important for transcription in leaves but not in embryos | | 50.00% |
Motif_330 | ANAERO5CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO5CONSENSUS by the PLACEdb curator | | 50.00% |
Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 50.00% |
Motif_376 | WRKY63 | ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis | | 50.00% |
Motif_560 | GLUTECOREOS | Core site required for binding of the trans-acting factor in the promoter region of rice glutelin (type 2 glutelin gene family) | | 50.00% |
Motif_31 | UPRE1AT | ERSEII-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR | | 50.00% |
Motif_11 | L4DCPAL1 | L4 element, found in PAL1 promoter in carrot (Daucus carota), is a UV-B responsive element; L4 contains Box L-like sequence (TCCAACCA) | | 50.00% |