PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_9
Name: AT5G04760
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_210	ARR1	Not Available	74.51%
Matrix_4	ARR14	Not Available	74.41%
Matrix_336	AT5G08520	Not Available	72.66%
Matrix_157	LHY; RVE2	Not Available	72.10%
Matrix_97	APRR2	Not Available	71.81%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	70.16%
Matrix_491	AT1G68670; AT3G25790	Not Available	68.89%
Matrix_69	AT2G03500	Not Available	68.14%
Matrix_361	AT1G25550	Not Available	67.56%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	67.42%
Matrix_324	AT2G01060	Not Available	67.36%
Matrix_106	AT5G47390	Not Available	66.72%
Matrix_16	AT3G04450; PHL1	Not Available	66.46%
Matrix_26	ATMYB3; MYB24	Not Available	66.42%
Matrix_6	AT1G70000	Not Available	66.41%
Matrix_162	AtPHR1	Not Available	66.04%
Matrix_293	WRKY38	Not Available	65.85%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	65.61%
Matrix_495	HD-GL2-1; ANL2	Not Available	65.43%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	64.91%
Matrix_114	EPR1; AT3G10113	Not Available	64.82%
Matrix_160	RVE1	Not Available	64.24%
Matrix_439	AP3	Not Available	64.17%
Matrix_329	WRKY12	Not Available	64.04%
Matrix_376	WRKY45	Not Available	64.01%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	64.00%
Matrix_38	SPL14	Not Available	63.93%
Matrix_383	CCA1	Not Available	63.51%
Matrix_328	AT1G76580	Not Available	63.20%
Matrix_435	ATHB51	Not Available	63.15%
Matrix_421	GLK1	Not Available	63.07%
Matrix_8	KAN1	Not Available	62.88%
Matrix_182	ATHB6	Not Available	62.77%
Matrix_115	AGL15	Not Available	62.63%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	62.38%
Matrix_269	FHY3/FAR1	Not Available	62.35%
Matrix_271	AT3G16350	Not Available	62.02%
Matrix_461	ATHB12	Not Available	61.76%
Matrix_71	ATHB7	Not Available	61.36%
Matrix_302	HAT1; HAT2	Not Available	61.05%
Matrix_431	ATHB21; HB-3	Not Available	60.70%
Matrix_152	EIL1; AT5G65100	Not Available	60.54%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	60.52%
Matrix_87	AT1G19000	Not Available	59.90%
Matrix_249	WRKY11	Not Available	59.87%
Matrix_447	RVE1	Not Available	59.63%
Matrix_423	AT3G04030	Not Available	59.36%
Matrix_393	REM1	Not Available	59.34%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	59.13%
Matrix_258	WOX13	Not Available	59.09%
Matrix_392	ARR2	Not Available	58.63%
Matrix_176	MYB98	Not Available	58.59%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	58.58%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	58.46%
Matrix_308	INO	Not Available	58.44%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	58.31%
Matrix_93	YAB5	Not Available	58.27%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	58.17%
Matrix_175	Dof5.7	Not Available	58.12%
Matrix_63	ARR10	Not Available	58.10%
Matrix_237	MYB55	Not Available	58.05%
Matrix_259	AT1G50680; AT1G51120	Not Available	57.88%
Matrix_456	bZIP60	Not Available	57.81%
Matrix_1	TOE2	Not Available	57.72%
Matrix_195	GATA2; GATA4	Not Available	57.72%
Matrix_81	YAB1	Not Available	57.70%
Motif_363	WRKY26	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	57.70%
Matrix_500	WRKY43	Not Available	57.47%
Matrix_236	CCA1	Not Available	57.36%
Matrix_48	PI	Not Available	57.20%
Matrix_422	TOE1	Not Available	57.18%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	57.11%
Matrix_226	GATA1	Not Available	56.72%
Matrix_120	BEE2	Not Available	56.59%
Matrix_12	EIN3; EIL2	Not Available	56.57%
Matrix_76	GATA10	Not Available	56.48%
Matrix_53	MYC3	Not Available	56.28%
Matrix_17	WRKY22	Not Available	56.26%
Matrix_75	WRKY29	Not Available	56.22%
Matrix_318	ATHB16	Not Available	56.15%
Matrix_180	SPL1	Not Available	56.12%
Matrix_70	GATA26	Not Available	56.06%
Matrix_333	GATA3	Not Available	56.00%
Matrix_32	AHL25	Not Available	55.82%
Matrix_451	STY1	Not Available	55.66%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	55.61%
Matrix_143	GATA14; GATA6; GATA5	Not Available	55.55%
Matrix_444	AT1G19485; AT4G17950	Not Available	55.51%
Matrix_142	ZFP8	Not Available	55.31%
Matrix_212	ATHB-12	Not Available	55.21%
Matrix_415	WRKY27	Not Available	55.09%
Matrix_350	ARR14	Not Available	55.05%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	55.05%
Matrix_465	MYC4	Not Available	55.01%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	54.99%
Matrix_522	GATA11; GATA13	Not Available	54.82%
Matrix_230	ARR11	Not Available	54.69%
Matrix_83	PRR5	Not Available	54.66%
Matrix_408	GATA12	Not Available	54.59%
Matrix_382	AT3G04850	Not Available	54.57%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	54.45%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	54.44%
Matrix_389	ILR3	Not Available	54.43%
Matrix_54	AHL20	Not Available	54.40%
Motif_470	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	54.37%
Matrix_286	GATA7	Not Available	54.22%
Matrix_330	MYC2; TT8	Not Available	54.20%
Matrix_489	RAV1	Not Available	54.16%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	54.11%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	54.10%
Matrix_219	AGL15	Not Available	53.98%
Matrix_322	NST3; ANAC015; BRN2	Not Available	53.73%
Motif_557	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.58%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	53.54%
Matrix_254	MYB52	Not Available	53.51%
Matrix_502	AT3G13040	Not Available	53.47%
Matrix_59	AT4G00238; AT4G00250	Not Available	53.44%
Matrix_174	ZAT2	Not Available	53.36%
Matrix_471	KAN4	Not Available	53.32%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	53.30%
Matrix_494	OBP4	Not Available	53.28%
Matrix_296	GBF2	Not Available	53.24%
Matrix_503	AT2G37430; AT3G53600	Not Available	53.21%
Matrix_425	TIFY2A	Not Available	53.21%
Matrix_472	ZN_C2_H2	Not Available	53.19%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	53.19%
Matrix_436	AT3G49930; AZF1	Not Available	53.18%
Matrix_197	NAP	Not Available	53.15%
Motif_174	SREATMSD	sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis	53.12%
Matrix_379	RHL41	Not Available	53.07%
Matrix_3	WRKY48	Not Available	53.07%
Matrix_483	ICU4	Not Available	53.06%
Matrix_46	AT4G21895	Not Available	53.05%
Matrix_201	AT1G74840	Not Available	52.99%
Matrix_218	TIFY2B; TIFY1	Not Available	52.90%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	52.84%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	52.82%
Matrix_88	AHL12	Not Available	52.80%
Matrix_99	DOF4.7	Not Available	52.78%
Matrix_391	AHL20	Not Available	52.78%
Matrix_37	GATA27	Not Available	52.78%
Matrix_62	HAT5	Not Available	52.76%
Matrix_151	ASIL1	Not Available	52.74%
Matrix_323	BIM3	Not Available	52.67%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	52.64%
Motif_500	D1GMAUX28	D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner	52.56%
Matrix_300	bZIP68; bZIP16	Not Available	52.52%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	52.49%
Matrix_429	KAN4	Not Available	52.48%
Matrix_129	ABF1	Not Available	52.44%
Matrix_92	AT1G33760	Not Available	52.39%
Matrix_449	BIM2	Not Available	52.28%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	52.26%
Matrix_370	WRKY50; WRKY51	Not Available	52.23%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	52.21%
Matrix_240	AT4G29000	Not Available	52.18%
Matrix_441	ATHB5	Not Available	52.17%
Matrix_341	HMGA	Not Available	52.16%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	52.15%
Matrix_512	HAT3	Not Available	52.14%
Motif_325	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	52.04%
Matrix_260	CAMTA3	Not Available	52.00%
Matrix_84	AtGRF6	Not Available	52.00%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	51.98%
Matrix_198	STZ; C2H2; AZF3	Not Available	51.90%
Matrix_135	ABI3	Not Available	51.90%
Matrix_416	ASL5	Not Available	51.87%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	51.86%
Matrix_125	AHL12	Not Available	51.81%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	51.76%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.72%
Motif_427	LS7ATPR1	LS7; A positive salicylic acid-inducible element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	51.70%
Matrix_126	RBE	Not Available	51.69%
Matrix_434	ARR11	Not Available	51.67%
Matrix_227	AT1G64620	Not Available	51.66%
Matrix_52	ZAT18	Not Available	51.53%
Matrix_427	ZAT14	Not Available	51.50%
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	51.43%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	51.39%
Matrix_85	SPL5	Not Available	51.38%
Matrix_499	ARR18	Not Available	51.33%
Matrix_279	HRS1	Not Available	51.29%
Matrix_101	ERF5	Not Available	51.29%
Matrix_248	ZFP5	Not Available	51.29%
Matrix_505	GATA8	Not Available	51.26%
Matrix_384	ATWRKY17	Not Available	51.04%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	51.03%
Matrix_148	WRKY60	Not Available	50.98%
Matrix_292	FTQ4	Not Available	50.87%
Matrix_239	AT5G04390	Not Available	50.84%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	50.82%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	50.80%
Motif_668	TCA1MOTIF	TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter	50.78%
Matrix_78	AT3G45610	Not Available	50.77%
Matrix_347	WOX14; WOX10	Not Available	50.73%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	50.62%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	50.61%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.59%
Matrix_14	ZCW32; AT5G62610	Not Available	50.46%
Motif_58	LREBOXIPCCHS1	BoxI; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; MRECHS (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat	50.42%
Matrix_168	AHL25	Not Available	50.34%
Matrix_287	ERF2	Not Available	50.34%
Matrix_450	SPL7	Not Available	50.28%
Matrix_355	ERF10; ERF11	Not Available	50.28%
Matrix_367	REM1	Not Available	50.08%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	50.08%
Matrix_409	DEAR3	Not Available	50.07%