PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_276
Name: AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_522	GATA11; GATA13	Not Available	69.48%
Matrix_383	CCA1	Not Available	69.25%
Matrix_236	CCA1	Not Available	68.54%
Matrix_391	AHL20	Not Available	67.92%
Matrix_160	RVE1	Not Available	66.82%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	66.50%
Matrix_505	GATA8	Not Available	66.30%
Matrix_76	GATA10	Not Available	66.13%
Matrix_114	EPR1; AT3G10113	Not Available	66.02%
Matrix_434	ARR11	Not Available	65.80%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	65.29%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	65.29%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	65.20%
Matrix_366	ARR14	Not Available	64.23%
Matrix_318	ATHB16	Not Available	63.56%
Matrix_279	HRS1	Not Available	62.89%
Matrix_62	HAT5	Not Available	61.99%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	61.26%
Matrix_37	GATA27	Not Available	61.20%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	61.20%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	61.17%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	61.17%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	61.17%
Motif_561	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	60.92%
Matrix_392	ARR2	Not Available	60.90%
Matrix_441	ATHB5	Not Available	60.49%
Matrix_421	GLK1	Not Available	60.32%
Matrix_444	AT1G19485; AT4G17950	Not Available	60.28%
Motif_253	S1FSORPL21	S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity	59.76%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	59.71%
Matrix_425	TIFY2A	Not Available	59.41%
Matrix_431	ATHB21; HB-3	Not Available	59.29%
Matrix_502	AT3G13040	Not Available	59.12%
Matrix_67	GLK1	Not Available	58.89%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	58.83%
Matrix_347	WOX14; WOX10	Not Available	58.49%
Matrix_303	ATWOX13	Not Available	58.35%
Matrix_520	ARR14	Not Available	58.20%
Matrix_453	EIL3	Not Available	58.13%
Matrix_218	TIFY2B; TIFY1	Not Available	58.12%
Matrix_157	LHY; RVE2	Not Available	58.01%
Matrix_185	AHL25	Not Available	57.98%
Matrix_483	ICU4	Not Available	57.85%
Matrix_8	KAN1	Not Available	57.64%
Matrix_435	ATHB51	Not Available	57.58%
Matrix_512	HAT3	Not Available	57.20%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	57.12%
Motif_262	WRKY70	Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana	57.10%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	57.07%
Matrix_327	ARR11	Not Available	57.03%
Matrix_32	AHL25	Not Available	56.53%
Matrix_408	GATA12	Not Available	56.01%
Matrix_88	AHL12	Not Available	55.82%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	55.71%
Matrix_521	AHL20	Not Available	55.54%
Matrix_429	KAN4	Not Available	55.48%
Motif_401	ARR1AT	ARR1-binding element found in Arabidopsis; ARR1 is a response regulator; AGATT is found in the promoter of rice non-symbiotic haemoglobin-2 (NSHB) gene	55.42%
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	55.40%
Motif_108	ROOTMOTIFTAPOX1	Motif found both in promoters of rolD	55.39%
Matrix_423	AT3G04030	Not Available	55.29%
Matrix_302	HAT1; HAT2	Not Available	54.48%
Motif_442	GT2OSPHYA	GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter	54.26%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	54.26%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	54.26%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	54.26%
Motif_207	MAMMALENHAN	Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene	54.26%
Motif_341	NAM	Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily	54.24%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	54.24%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	54.24%
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	54.24%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	54.22%
Matrix_71	ATHB7	Not Available	54.21%
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	54.20%
Motif_688	AMMORESIVDCRNIA1	Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression	54.20%
Motif_500	D1GMAUX28	D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner	54.18%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	54.18%
Motif_321	TATABOX5	TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis	54.17%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.15%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	54.15%
Matrix_125	AHL12	Not Available	54.12%
Matrix_442	AT5G62260	Not Available	54.02%
Matrix_168	AHL25	Not Available	54.01%
Matrix_195	GATA2; GATA4	Not Available	53.94%
Matrix_112	TBP2; TFIID-1	Not Available	53.48%
Matrix_143	GATA14; GATA6; GATA5	Not Available	53.40%
Matrix_341	HMGA	Not Available	52.83%
Matrix_203	GATA9; GATA12	Not Available	52.57%
Matrix_63	ARR10	Not Available	52.40%
Matrix_4	ARR14	Not Available	52.05%
Matrix_170	AT5G47660	Not Available	51.79%
Matrix_226	GATA1	Not Available	51.73%
Matrix_313	ATMYB65; MYB33	Not Available	51.68%
Matrix_70	GATA26	Not Available	51.54%
Matrix_210	ARR1	Not Available	51.28%
Matrix_182	ATHB6	Not Available	51.23%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.20%
Matrix_461	ATHB12	Not Available	50.86%
Matrix_201	AT1G74840	Not Available	50.64%
Matrix_54	AHL20	Not Available	50.46%
Matrix_324	AT2G01060	Not Available	50.44%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	50.43%
Matrix_142	ZFP8	Not Available	50.34%
Matrix_97	APRR2	Not Available	50.27%
Matrix_100	AT1G48610	Not Available	50.24%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	50.21%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	50.21%
Motif_347	OPAQUE2ZMB32	opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)	50.21%
Motif_40	MRNASTA2CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon	50.16%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	50.15%
Motif_523	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.15%
Motif_382	CATATGGMSAUR	Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	50.14%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	50.12%
Matrix_411	DOF5.6	Not Available	50.11%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	50.06%
Matrix_38	SPL14	Not Available	50.05%