PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_275
Name: ZAP1
Description: Characterization of a zinc-dependent transcriptional activator from Arabidopsis

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_270	ELRECOREPCRP1	ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis	66.42%
Motif_639	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	64.89%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	64.40%
Matrix_165	KNAT1	Not Available	63.84%
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	63.40%
Motif_386	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	62.73%
Motif_413	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	61.93%
Motif_443	KN1; BP	The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways. Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity	59.92%
Matrix_281	TCP13	Not Available	59.59%
Motif_648	ARE2	ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1	59.13%
Matrix_303	ATWOX13	Not Available	58.31%
Matrix_362	DEAR3	Not Available	58.15%
Motif_440	TGA1 binding site motif	Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	56.31%
Motif_663	E2F binding site motif; E2F/DP BS in AtCDC6	Not Available	56.23%
Motif_576	TGACGTVMAMY	TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds	56.03%
Matrix_94	TCP5	Not Available	55.91%
Matrix_482	AT2G25650; AT4G00270	Not Available	55.83%
Motif_378	WRKY6	Targets of AtWRKY6 regulation during plant senescence and pathogen defense	55.73%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	55.62%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	55.56%
Motif_661	WBOXATNPR1	W-box found in promoter of Arabidopsis thaliana NPR1 gene; Located between +70 and +79 in tandem; They were recognized specifically by salicylic acid (SA)-induced WRKY DNA binding proteins; A cluster of WRKY binding sites act as negative regulatory elements for the inducible expression of AtWRKY18; Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression	55.56%
Motif_519	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	55.35%
Matrix_347	WOX14; WOX10	Not Available	55.32%
Matrix_82	TCP17	Not Available	54.65%
Matrix_505	GATA8	Not Available	54.59%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	54.52%
Motif_135	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.52%
Matrix_294	MEE35	Not Available	54.51%
Motif_80	AP1SV40	AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	54.44%
Motif_586	ASF1MOTIFCAMV	ASF-1 binding site in CaMV 35S promoter; ASF-1 binds to two TGACG motifs; Found in HBP-1 binding site of wheat histone H3 gene; TGACG motifs are found in many promoters and are involved in transcriptional activation of several genes by auxin and/or salicylic acid; May be relevant to light regulation; Binding site of tobacco TGA1a; TGA1a and b show homology to CREB; TGA6 is a new member of the TGA family; Abiotic and biotic stress differentially stimulate as-1 element activity	54.32%
Motif_524	WRKY40; WRKY62; WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis. Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors	54.23%
Motif_557	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.23%
Motif_227	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.23%
Motif_205	WRKY43; WRKY38; WRKY26; WRKY11	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.23%
Motif_121	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.23%
Motif_52	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.20%
Motif_593	E2Fb; E2Fc; E2Fd; E2Ff; E2Fe; E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities	54.20%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	54.00%
Motif_337	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.95%
Matrix_334	AT3G23230	Not Available	53.93%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	53.88%
Motif_596	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.81%
Matrix_86	CRF5; CRF6; CRF4	Not Available	53.80%
Motif_344	MSACRCYM	MSA (M-specific activator) motif in Catharanthus roseus B-type cyclin (CYM) promoter; Essential for M phase-specific expression; Found at -66 to -58	53.75%
Matrix_492	ETT	Not Available	53.59%
Matrix_506	DRNL; ATERF-4	Not Available	53.47%
Motif_522	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	53.37%
Motif_643	DRE2COREZMRAB17	DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA	53.28%
Matrix_37	GATA27	Not Available	53.21%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	53.09%
Matrix_167	ZAT6	Not Available	53.00%
Matrix_426	CRF1; CRF2	Not Available	52.99%
Motif_683	AtMYB2 BS in RD22	Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression	52.85%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	52.58%
Motif_190	WUSATAg	Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis	52.53%
Motif_653	INTRONLOWER	3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns	52.41%
Motif_26	GRF7	Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A	52.41%
Motif_372	E2FAT	E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression	52.35%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	52.14%
Matrix_85	SPL5	Not Available	52.11%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	52.04%
Motif_379	ABRECE1HVA22	CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1	52.04%
Matrix_321	HRD	Not Available	52.04%
Motif_490	PROLAMINBOXOSGLUB1	Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene	52.01%
Matrix_243	RAP2.12; RAP2.2	Not Available	51.99%
Motif_351	GARE1OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	51.99%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	51.86%
Matrix_31	SPL1	Not Available	51.12%
Motif_587	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	51.06%
Matrix_460	NAM; anac025; ATNAC2	Not Available	50.74%
Matrix_463	HAT3.1	Not Available	50.60%
Matrix_418	KNAT6; KNAT2	Not Available	50.48%
Matrix_516	ANAC038; ANAC079	Not Available	50.29%
Matrix_433	ATERF1	Not Available	50.27%
Motif_348	WBBOXPCWRKY1	WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis	50.25%
Motif_186	WBOXNTERF3	W box found in the promoter region of a transcriptional repressor ERF3 gene in tobacco; May be involved in activation of ERF3 gene by wounding	50.25%
Motif_630	WBOXNTCHN48	W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco	50.25%
Matrix_188	SPL4	Not Available	50.14%
Motif_85	SORLIP5AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.08%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	50.06%
Matrix_307	RGL2; RGL3	Not Available	50.05%