Matrix_50 | ATERF14; AT5G43410 | Not Available | | 88.60% |
Matrix_363 | RAP2.3 | Not Available | | 86.27% |
Matrix_448 | ATERF6 | Not Available | | 83.26% |
Matrix_288 | RAP2.3 | Not Available | | 82.80% |
Matrix_119 | RRTF1 | Not Available | | 82.46% |
Matrix_138 | RRTF1 | Not Available | | 81.94% |
Matrix_409 | DEAR3 | Not Available | | 80.01% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 79.99% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 79.23% |
Matrix_355 | ERF10; ERF11 | Not Available | | 79.14% |
Matrix_277 | RAP2.6 | Not Available | | 78.79% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 78.41% |
Matrix_433 | ATERF1 | Not Available | | 77.47% |
Matrix_360 | ORA59 | Not Available | | 75.88% |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 75.83% |
Matrix_61 | ATCBF3 | Not Available | | 75.74% |
Matrix_295 | ERF1 | Not Available | | 74.46% |
Matrix_426 | CRF1; CRF2 | Not Available | | 73.18% |
Matrix_244 | DREB2C | Not Available | | 73.02% |
Matrix_484 | ATERF13 | Not Available | | 72.77% |
Matrix_261 | ATERF-1 | Not Available | | 72.66% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 72.32% |
Matrix_394 | DREB_U | Not Available | | 72.20% |
Matrix_92 | AT1G33760 | Not Available | | 72.05% |
Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 71.99% |
Matrix_91 | CRF3 | Not Available | | 71.75% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 71.35% |
Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 71.26% |
Matrix_385 | DEAR4 | Not Available | | 71.13% |
Matrix_378 | ATERF1 | Not Available | | 71.02% |
Matrix_517 | ERF12 | Not Available | | 70.93% |
Matrix_252 | RAP2.6 | Not Available | | 70.56% |
Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 70.50% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 70.36% |
Matrix_147 | ERF3; AT1G80580 | Not Available | | 69.93% |
Matrix_45 | DRN | Not Available | | 69.43% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 68.74% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 68.27% |
Matrix_321 | HRD | Not Available | | 67.92% |
Matrix_272 | DEAR4 | Not Available | | 67.31% |
Matrix_146 | ORA47 | Not Available | | 67.01% |
Matrix_343 | AT2G33710 | Not Available | | 66.97% |
Motif_509 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 66.13% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 65.85% |
Matrix_169 | E2F1 | Not Available | | 65.62% |
Matrix_473 | RRTF1 | Not Available | | 65.59% |
Motif_144 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 65.11% |
Matrix_234 | RAP2.3 | Not Available | | 64.86% |
Matrix_151 | ASIL1 | Not Available | | 63.91% |
Matrix_387 | ORA47 | Not Available | | 63.86% |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 63.82% |
Matrix_462 | ATERF-8 | Not Available | | 63.65% |
Motif_219 | E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 63.56% |
Motif_37 | AtERF-4 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 62.96% |
Matrix_406 | ATERF-7 | Not Available | | 62.78% |
Matrix_334 | AT3G23230 | Not Available | | 62.77% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 62.44% |
Matrix_171 | LBD3; LBD4 | Not Available | | 62.43% |
Matrix_5 | AT5G51190; ERF104 | Not Available | | 62.36% |
Motif_99 | DREB1A; DREB1C; DREB1B | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit | | 62.35% |
Matrix_253 | ETT | Not Available | | 62.29% |
Matrix_475 | AT5G64220 | Not Available | | 62.27% |
Matrix_373 | E2FE | Not Available | | 62.14% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 62.10% |
Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 62.00% |
Motif_191 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 62.00% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 61.79% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 61.68% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 61.43% |
Matrix_260 | CAMTA3 | Not Available | | 61.30% |
Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 61.07% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 60.95% |
Matrix_40 | TCP2 | Not Available | | 60.94% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 60.51% |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 59.98% |
Matrix_130 | TCP16 | Not Available | | 59.59% |
Matrix_420 | ANAC58 | Not Available | | 59.56% |
Matrix_348 | AT5G51910 | Not Available | | 59.49% |
Matrix_190 | ATERF1 | Not Available | | 59.47% |
Matrix_287 | ERF2 | Not Available | | 59.42% |
Matrix_329 | WRKY12 | Not Available | | 59.42% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 59.05% |
Matrix_282 | bZIP60 | Not Available | | 58.98% |
Matrix_456 | bZIP60 | Not Available | | 58.94% |
Matrix_23 | ANAC46 | Not Available | | 58.88% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 58.72% |
Motif_577 | GRAZMRAB28 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130 | | 58.72% |
Matrix_293 | WRKY38 | Not Available | | 58.46% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 58.34% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 58.28% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 58.17% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 58.11% |
Matrix_500 | WRKY43 | Not Available | | 58.07% |
Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 58.01% |
Matrix_481 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 57.94% |
Matrix_478 | AT1G01250 | Not Available | | 57.73% |
Matrix_228 | TGA2 | Not Available | | 57.60% |
Matrix_492 | ETT | Not Available | | 57.31% |
Matrix_230 | ARR11 | Not Available | | 57.29% |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | | 57.28% |
Matrix_405 | DREB2C | Not Available | | 57.25% |
Matrix_42 | AT2G45680 | Not Available | | 57.10% |
Matrix_249 | WRKY11 | Not Available | | 56.99% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 56.27% |
Matrix_80 | BIM1 | Not Available | | 56.15% |
Motif_89 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 56.14% |
Motif_32 | DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 56.14% |
Motif_394 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 56.14% |
Matrix_101 | ERF5 | Not Available | | 56.12% |
Matrix_237 | MYB55 | Not Available | | 56.06% |
Motif_620 | DREB1&2 BS in rd29a | Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor | | 55.94% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 55.89% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 55.87% |
Motif_74 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 55.75% |
Motif_650 | SITEIIAOSPCNA | Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4 | | 55.74% |
Matrix_518 | AT2G21230 | Not Available | | 55.58% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 55.53% |
Matrix_271 | AT3G16350 | Not Available | | 55.41% |
Matrix_350 | ARR14 | Not Available | | 55.23% |
Matrix_505 | GATA8 | Not Available | | 55.22% |
Motif_374 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 55.18% |
Matrix_106 | AT5G47390 | Not Available | | 55.00% |
Matrix_389 | ILR3 | Not Available | | 54.94% |
Motif_393 | AUXREPSIAA4 | AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems | | 54.82% |
Matrix_292 | FTQ4 | Not Available | | 54.82% |
Matrix_139 | OBF5 | Not Available | | 54.81% |
Matrix_70 | GATA26 | Not Available | | 54.78% |
Matrix_197 | NAP | Not Available | | 54.76% |
Matrix_362 | DEAR3 | Not Available | | 54.67% |
Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 54.67% |
Matrix_79 | FUS3 | Not Available | | 54.53% |
Motif_203 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 54.45% |
Motif_128 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 54.45% |
Matrix_502 | AT3G13040 | Not Available | | 54.40% |
Motif_259 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 54.32% |
Matrix_6 | AT1G70000 | Not Available | | 53.91% |
Matrix_376 | WRKY45 | Not Available | | 53.82% |
Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 53.70% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 53.65% |
Motif_621 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 53.62% |
Motif_619 | SITEIIBOSPCNA | Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes | | 53.62% |
Motif_680 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 53.57% |
Motif_636 | AMMORESVDCRNIA1 | Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation | | 53.18% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 53.10% |
Motif_684 | MNF1ZMPPC1 | MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction | | 53.08% |
Motif_97 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 53.05% |
Motif_602 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 53.05% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 53.03% |
Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | | 52.96% |
Matrix_37 | GATA27 | Not Available | | 52.95% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 52.95% |
Matrix_415 | WRKY27 | Not Available | | 52.93% |
Matrix_416 | ASL5 | Not Available | | 52.91% |
Matrix_141 | AT3G25990 | Not Available | | 52.88% |
Motif_385 | GGTCCCATGMSAUR | Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | | 52.82% |
Matrix_158 | AT1G03040; LRL1; UNE12; LRL2; LRL3 | Not Available | | 52.80% |
Matrix_328 | AT1G76580 | Not Available | | 52.78% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 52.73% |
Matrix_186 | FHY3 | Not Available | | 52.67% |
Matrix_463 | HAT3.1 | Not Available | | 52.66% |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 52.65% |
Matrix_85 | SPL5 | Not Available | | 52.63% |
Matrix_120 | BEE2 | Not Available | | 52.60% |
Matrix_22 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 52.58% |
Matrix_200 | PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815 | Not Available | | 52.50% |
Matrix_174 | ZAT2 | Not Available | | 52.50% |
Matrix_332 | SPT; ALC | Not Available | | 52.39% |
Matrix_507 | TCP3 | Not Available | | 52.36% |
Matrix_450 | SPL7 | Not Available | | 52.17% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 52.17% |
Motif_264 | GCBP2ZMGAPC4 | Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285 | | 52.13% |
Motif_405 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 52.09% |
Matrix_504 | WRKY40 | Not Available | | 52.02% |
Matrix_84 | AtGRF6 | Not Available | | 51.96% |
Matrix_122 | ABF1; AREB2 | Not Available | | 51.95% |
Matrix_330 | MYC2; TT8 | Not Available | | 51.91% |
Matrix_290 | AP2 | Not Available | | 51.83% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 51.63% |
Matrix_392 | ARR2 | Not Available | | 51.59% |
Matrix_38 | SPL14 | Not Available | | 51.55% |
Matrix_297 | TCP15 | Not Available | | 51.44% |
Matrix_465 | MYC4 | Not Available | | 51.43% |
Matrix_323 | BIM3 | Not Available | | 51.36% |
Matrix_286 | GATA7 | Not Available | | 51.32% |
Motif_461 | MYB80 | The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana | | 51.26% |
Matrix_393 | REM1 | Not Available | | 51.26% |
Matrix_516 | ANAC038; ANAC079 | Not Available | | 51.19% |
Matrix_281 | TCP13 | Not Available | | 51.15% |
Matrix_52 | ZAT18 | Not Available | | 51.12% |
Matrix_296 | GBF2 | Not Available | | 51.07% |
Matrix_129 | ABF1 | Not Available | | 51.07% |
Matrix_97 | APRR2 | Not Available | | 51.06% |
Matrix_308 | INO | Not Available | | 50.97% |
Matrix_226 | GATA1 | Not Available | | 50.87% |
Matrix_67 | GLK1 | Not Available | | 50.85% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 50.61% |
Matrix_446 | LBD16 | Not Available | | 50.60% |
Matrix_110 | ATABI4; AT3G57600 | Not Available | | 50.58% |
Matrix_480 | BES1 | Not Available | | 50.53% |
Matrix_410 | TOE2 | Not Available | | 50.53% |
Matrix_148 | WRKY60 | Not Available | | 50.50% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 50.49% |
Matrix_449 | BIM2 | Not Available | | 50.49% |
Matrix_195 | GATA2; GATA4 | Not Available | | 50.33% |
Matrix_223 | MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1 | Not Available | | 50.31% |
Matrix_285 | DDF1 | Not Available | | 50.29% |
Matrix_311 | TGA1 | Not Available | | 50.27% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 50.18% |
Matrix_53 | MYC3 | Not Available | | 50.15% |
Matrix_209 | RAP2.6 | Not Available | | 50.14% |
Matrix_300 | bZIP68; bZIP16 | Not Available | | 50.03% |