PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_216
Name: TCP16
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_297	TCP15	Not Available	80.09%
Matrix_232	TCP23	Not Available	79.48%
Matrix_507	TCP3	Not Available	79.07%
Matrix_130	TCP16	Not Available	71.72%
Matrix_294	MEE35	Not Available	71.29%
Matrix_82	TCP17	Not Available	70.35%
Matrix_94	TCP5	Not Available	67.96%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	67.32%
Motif_31	UPRE1AT	ERSEII-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	66.85%
Matrix_281	TCP13	Not Available	66.14%
Matrix_42	AT2G45680	Not Available	65.87%
Matrix_102	WRKY21	Not Available	65.56%
Matrix_470	WRKY18	Not Available	65.50%
Matrix_220	WRKY18	Not Available	65.42%
Matrix_144	AT5G08330; AT5G23280	Not Available	64.57%
Matrix_370	WRKY50; WRKY51	Not Available	63.35%
Matrix_348	AT5G51910	Not Available	63.14%
Matrix_3	WRKY48	Not Available	62.95%
Matrix_384	ATWRKY17	Not Available	62.07%
Matrix_245	WRKY62; WRKY38	Not Available	61.98%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	61.95%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	61.53%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	61.47%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	61.08%
Matrix_289	WRKY25	Not Available	60.88%
Matrix_405	DREB2C	Not Available	60.67%
Matrix_196	TCP20; AT5G41030	Not Available	60.48%
Matrix_197	NAP	Not Available	60.40%
Matrix_40	TCP2	Not Available	60.31%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	60.30%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	60.09%
Matrix_75	WRKY29	Not Available	60.07%
Motif_122	TGTCACACMCUCUMISIN	TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene	59.71%
Matrix_17	WRKY22	Not Available	59.35%
Matrix_290	AP2	Not Available	59.02%
Matrix_148	WRKY60	Not Available	58.75%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	58.60%
Matrix_415	WRKY27	Not Available	58.29%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	58.08%
Motif_264	GCBP2ZMGAPC4	Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285	57.30%
Matrix_504	WRKY40	Not Available	57.01%
Matrix_432	AT1G77920	Not Available	56.95%
Matrix_146	ORA47	Not Available	56.85%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	56.84%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	56.55%
Motif_71	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	56.53%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	56.45%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	56.27%
Motif_543	TATCCACHVAL21	TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response	55.88%
Motif_256	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	55.55%
Matrix_190	ATERF1	Not Available	55.15%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	54.99%
Matrix_101	ERF5	Not Available	54.89%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	54.87%
Matrix_128	TGA2	Not Available	54.69%
Matrix_362	DEAR3	Not Available	54.67%
Matrix_253	ETT	Not Available	54.55%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	54.53%
Matrix_287	ERF2	Not Available	53.84%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	53.82%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	53.67%
Motif_199	GCN4OSGLUB1	GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression	53.53%
Matrix_426	CRF1; CRF2	Not Available	53.35%
Matrix_457	TGA2	Not Available	53.34%
Matrix_333	GATA3	Not Available	53.33%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	53.29%
Matrix_328	AT1G76580	Not Available	53.23%
Matrix_390	GT-1	Not Available	53.21%
Matrix_169	E2F1	Not Available	53.19%
Matrix_453	EIL3	Not Available	52.96%
Matrix_285	DDF1	Not Available	52.93%
Matrix_110	ATABI4; AT3G57600	Not Available	52.89%
Matrix_143	GATA14; GATA6; GATA5	Not Available	52.88%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	52.80%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	52.63%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	52.57%
Matrix_86	CRF5; CRF6; CRF4	Not Available	52.44%
Matrix_234	RAP2.3	Not Available	52.10%
Matrix_70	GATA26	Not Available	52.04%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	52.01%
Matrix_261	ATERF-1	Not Available	51.89%
Motif_307	TATCCAYMOTIFOSRAMY3D	TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression	51.76%
Matrix_343	AT2G33710	Not Available	51.76%
Matrix_450	SPL7	Not Available	51.73%
Matrix_378	ATERF1	Not Available	51.72%
Matrix_139	OBF5	Not Available	51.70%
Matrix_175	Dof5.7	Not Available	51.67%
Matrix_311	TGA1	Not Available	51.65%
Matrix_38	SPL14	Not Available	51.63%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.60%
Motif_603	SITEIIATCYTC	Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice	51.53%
Matrix_321	HRD	Not Available	51.23%
Motif_286	SEBFCONSSTPR10A	Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element	50.98%
Matrix_505	GATA8	Not Available	50.93%
Matrix_209	RAP2.6	Not Available	50.84%
Motif_459	SORLIP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.75%
Matrix_52	ZAT18	Not Available	50.74%
Matrix_473	RRTF1	Not Available	50.73%
Matrix_500	WRKY43	Not Available	50.55%
Matrix_482	AT2G25650; AT4G00270	Not Available	50.52%
Motif_293	NONAMERATH4	Nonamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene	50.44%
Matrix_418	KNAT6; KNAT2	Not Available	50.36%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	50.21%
Matrix_506	DRNL; ATERF-4	Not Available	50.16%
Matrix_272	DEAR4	Not Available	50.16%
Matrix_252	RAP2.6	Not Available	50.15%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.08%
Matrix_463	HAT3.1	Not Available	50.05%
Matrix_489	RAV1	Not Available	50.03%