Matrix_272 | DEAR4 | Not Available | | 90.45% |
Matrix_252 | RAP2.6 | Not Available | | 87.05% |
Matrix_378 | ATERF1 | Not Available | | 86.70% |
Matrix_473 | RRTF1 | Not Available | | 85.25% |
Matrix_234 | RAP2.3 | Not Available | | 85.02% |
Matrix_343 | AT2G33710 | Not Available | | 82.48% |
Matrix_190 | ATERF1 | Not Available | | 78.57% |
Matrix_287 | ERF2 | Not Available | | 75.26% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 72.78% |
Matrix_101 | ERF5 | Not Available | | 71.91% |
Matrix_138 | RRTF1 | Not Available | | 71.66% |
Matrix_362 | DEAR3 | Not Available | | 71.40% |
Matrix_288 | RAP2.3 | Not Available | | 71.22% |
Matrix_261 | ATERF-1 | Not Available | | 71.10% |
Matrix_147 | ERF3; AT1G80580 | Not Available | | 70.96% |
Matrix_45 | DRN | Not Available | | 70.28% |
Matrix_91 | CRF3 | Not Available | | 70.26% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 70.15% |
Matrix_321 | HRD | Not Available | | 70.09% |
Matrix_484 | ATERF13 | Not Available | | 70.00% |
Matrix_426 | CRF1; CRF2 | Not Available | | 69.54% |
Matrix_405 | DREB2C | Not Available | | 69.54% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 69.19% |
Matrix_409 | DEAR3 | Not Available | | 68.83% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 68.63% |
Matrix_295 | ERF1 | Not Available | | 68.28% |
Matrix_363 | RAP2.3 | Not Available | | 67.96% |
Matrix_119 | RRTF1 | Not Available | | 67.90% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 67.89% |
Matrix_517 | ERF12 | Not Available | | 67.24% |
Matrix_224 | ERF1 | Not Available | | 67.01% |
Matrix_360 | ORA59 | Not Available | | 66.85% |
Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 66.46% |
Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 66.31% |
Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 65.36% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 64.06% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 64.03% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 63.53% |
Matrix_277 | RAP2.6 | Not Available | | 63.27% |
Motif_99 | DREB1A; DREB1C; DREB1B | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit | | 63.23% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 63.05% |
Matrix_297 | TCP15 | Not Available | | 62.88% |
Matrix_334 | AT3G23230 | Not Available | | 62.46% |
Matrix_5 | AT5G51190; ERF104 | Not Available | | 62.36% |
Matrix_232 | TCP23 | Not Available | | 61.90% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 61.73% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 61.69% |
Matrix_187 | CDC5 | Not Available | | 61.61% |
Matrix_349 | CDC5 | Not Available | | 61.61% |
Matrix_448 | ATERF6 | Not Available | | 61.48% |
Matrix_355 | ERF10; ERF11 | Not Available | | 61.19% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 61.17% |
Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 61.06% |
Matrix_209 | RAP2.6 | Not Available | | 60.84% |
Matrix_169 | E2F1 | Not Available | | 60.74% |
Matrix_507 | TCP3 | Not Available | | 60.39% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 60.34% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 60.30% |
Matrix_433 | ATERF1 | Not Available | | 60.22% |
Matrix_385 | DEAR4 | Not Available | | 60.17% |
Matrix_457 | TGA2 | Not Available | | 59.84% |
Matrix_61 | ATCBF3 | Not Available | | 59.82% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 59.66% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 59.48% |
Matrix_244 | DREB2C | Not Available | | 59.47% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 59.37% |
Motif_577 | GRAZMRAB28 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130 | | 59.24% |
Matrix_452 | MYB46 | Not Available | | 59.02% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 58.93% |
Matrix_171 | LBD3; LBD4 | Not Available | | 58.73% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 58.55% |
Matrix_92 | AT1G33760 | Not Available | | 58.32% |
Matrix_285 | DDF1 | Not Available | | 57.95% |
Matrix_394 | DREB_U | Not Available | | 57.88% |
Matrix_489 | RAV1 | Not Available | | 57.77% |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 57.75% |
Matrix_478 | AT1G01250 | Not Available | | 57.58% |
Motif_37 | AtERF-4 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 57.41% |
Matrix_373 | E2FE | Not Available | | 57.34% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 57.34% |
Matrix_3 | WRKY48 | Not Available | | 57.09% |
Matrix_475 | AT5G64220 | Not Available | | 56.99% |
Motif_239 | MYB2 | Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 56.92% |
Matrix_216 | TCP16 | Not Available | | 56.85% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 56.72% |
Matrix_110 | ATABI4; AT3G57600 | Not Available | | 56.70% |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 56.65% |
Motif_191 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 56.64% |
Matrix_331 | GBF1 | Not Available | | 56.60% |
Matrix_102 | WRKY21 | Not Available | | 56.35% |
Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | | 56.33% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 56.23% |
Motif_583 | AtbZIP1 | The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 56.08% |
Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 56.03% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 55.86% |
Matrix_221 | SPL7 | Not Available | | 55.61% |
Matrix_135 | ABI3 | Not Available | | 55.49% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 55.48% |
Matrix_406 | ATERF-7 | Not Available | | 55.46% |
Motif_372 | E2FAT | E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression | | 55.35% |
Motif_636 | AMMORESVDCRNIA1 | Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation | | 55.17% |
Matrix_75 | WRKY29 | Not Available | | 55.15% |
Matrix_450 | SPL7 | Not Available | | 55.10% |
Matrix_300 | bZIP68; bZIP16 | Not Available | | 54.94% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 54.91% |
Motif_602 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 54.89% |
Motif_650 | SITEIIAOSPCNA | Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4 | | 54.84% |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 54.81% |
Matrix_69 | AT2G03500 | Not Available | | 54.76% |
Matrix_151 | ASIL1 | Not Available | | 54.65% |
Matrix_389 | ILR3 | Not Available | | 54.65% |
Matrix_41 | anac058 | Not Available | | 54.63% |
Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 54.62% |
Matrix_296 | GBF2 | Not Available | | 54.61% |
Matrix_162 | AtPHR1 | Not Available | | 54.55% |
Matrix_415 | WRKY27 | Not Available | | 54.54% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 54.48% |
Matrix_16 | AT3G04450; PHL1 | Not Available | | 54.41% |
Matrix_384 | ATWRKY17 | Not Available | | 54.37% |
Matrix_197 | NAP | Not Available | | 54.29% |
Matrix_109 | GBF3 | Not Available | | 54.24% |
Matrix_17 | WRKY22 | Not Available | | 54.11% |
Matrix_462 | ATERF-8 | Not Available | | 54.07% |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | | 54.07% |
Motif_13 | E2F-varient binding site motif | A genome-wide identification of E2F-regulated genes in Arabidopsis | | 53.93% |
Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | | 53.88% |
Matrix_175 | Dof5.7 | Not Available | | 53.75% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 53.64% |
Matrix_323 | BIM3 | Not Available | | 53.63% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 53.62% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 53.43% |
Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 53.41% |
Matrix_188 | SPL4 | Not Available | | 53.35% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 53.19% |
Matrix_399 | TGA1 | Not Available | | 53.11% |
Matrix_186 | FHY3 | Not Available | | 53.01% |
Matrix_141 | AT3G25990 | Not Available | | 52.98% |
Matrix_348 | AT5G51910 | Not Available | | 52.68% |
Matrix_313 | ATMYB65; MYB33 | Not Available | | 52.61% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 52.58% |
Matrix_158 | AT1G03040; LRL1; UNE12; LRL2; LRL3 | Not Available | | 52.47% |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 52.46% |
Matrix_330 | MYC2; TT8 | Not Available | | 52.42% |
Matrix_420 | ANAC58 | Not Available | | 52.30% |
Matrix_467 | RAV1 | Not Available | | 52.25% |
Matrix_477 | RAV1 | Not Available | | 52.25% |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | | 52.25% |
Matrix_42 | AT2G45680 | Not Available | | 52.23% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 52.21% |
Matrix_465 | MYC4 | Not Available | | 51.89% |
Matrix_260 | CAMTA3 | Not Available | | 51.85% |
Matrix_307 | RGL2; RGL3 | Not Available | | 51.80% |
Matrix_324 | AT2G01060 | Not Available | | 51.78% |
Motif_463 | GRAZMRAB17 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab17 gene from maize; Important for transcription in leaves but not in embryos | | 51.78% |
Matrix_423 | AT3G04030 | Not Available | | 51.78% |
Motif_354 | VSF1PVGRP18 | VSF-1 binding site in French bean grp1.8 gene promoter; VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site is found in 28 bp vs-1 element; This sequence controls vascular gene expression in transgenic tobacco; VS-1 found in bean grp1.8 gene promoter; Located between -203 and -176; Partially overlaps with NRE; Confers xylem-specific expression | | 51.74% |
Matrix_23 | ANAC46 | Not Available | | 51.63% |
Matrix_120 | BEE2 | Not Available | | 51.62% |
Matrix_472 | ZN_C2_H2 | Not Available | | 51.59% |
Matrix_80 | BIM1 | Not Available | | 51.48% |
Matrix_449 | BIM2 | Not Available | | 51.41% |
Matrix_53 | MYC3 | Not Available | | 51.33% |
Matrix_361 | AT1G25550 | Not Available | | 51.33% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 51.27% |
Matrix_137 | SPL1; SPL12 | Not Available | | 51.26% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 51.17% |
Matrix_139 | OBF5 | Not Available | | 51.16% |
Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 51.04% |
Matrix_40 | TCP2 | Not Available | | 51.03% |
Matrix_432 | AT1G77920 | Not Available | | 50.98% |
Matrix_456 | bZIP60 | Not Available | | 50.91% |
Matrix_79 | FUS3 | Not Available | | 50.91% |
Matrix_504 | WRKY40 | Not Available | | 50.91% |
Matrix_156 | POC1 | Not Available | | 50.82% |
Matrix_173 | ZAP1 | Not Available | | 50.82% |
Matrix_469 | NAC041; NAC083 | Not Available | | 50.77% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 50.76% |
Matrix_339 | bHLH104 | Not Available | | 50.67% |
Matrix_328 | AT1G76580 | Not Available | | 50.64% |
Matrix_174 | ZAT2 | Not Available | | 50.62% |
Matrix_128 | TGA2 | Not Available | | 50.56% |
Matrix_352 | LEC2 | Not Available | | 50.55% |
Matrix_200 | PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815 | Not Available | | 50.53% |
Matrix_422 | TOE1 | Not Available | | 50.52% |
Motif_555 | ABRECE3ZMRAB28 | CE3 (coupling element 3) in maize rab28 gene promoter; ABA responsive element; stress response; Similar (10 of 12) to CE3 in A1 gene of barley; See ABRECE3HVA1; Found at -126 to -115 | | 50.51% |
Matrix_1 | TOE2 | Not Available | | 50.35% |
Motif_238 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 50.28% |
Matrix_333 | GATA3 | Not Available | | 50.25% |
Matrix_220 | WRKY18 | Not Available | | 50.21% |
Matrix_227 | AT1G64620 | Not Available | | 50.21% |
Matrix_12 | EIN3; EIL2 | Not Available | | 50.20% |
Matrix_210 | ARR1 | Not Available | | 50.14% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 50.10% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 50.04% |
Matrix_223 | MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1 | Not Available | | 50.01% |