| IGR sequence: | igr2356#chr3#x1=9872012#l=10062 |
|---|---|
| Mature miRNA sequence: | GUAGCCAAGGAUGACUUGCCUG |
| encoded miRNA: | MIR13b |
| Precursor location: | 7799 - 7947 (negative strand) |
| precursor length: | 149 (54 basepairs) |
| MIR position: | 1 - 22 (7926 - 7947) |
| MIR length: | 22 (20 paired bases) |
| miRNA location TIGR v3: | chr3:9879810<9879958 |
| miRNA location TIGR v5: | chr3:9879800<9879948 |
| Folding energy: | -57.20 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster006 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **
GUAGCCAAGG AUGACUUGCC UGAUCUUUUU CGCCUCCACG AUUCAAUUUC AAAUUCAUGC 60
(((((((((( (-((((-((( (((-(((--- -((((-((-( ((((((---- -----((((-
AUUUUGGAUU AUUAUACCUU UUAAAGUAUA AUAGGUCAAA UAUCAUGUUG AAUCUUGCGG 120
--((((--(( (((((((___ _____))))) ))))--)))) ---))))))) ))))-))-))
GUUAGGUUUC AGGCAGUCUC UUUGGCUAU 149
))-)))--)) )))))))))) )))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g17590.1 | 68408.m01959 transcription factor -related | 3 | 10 |
| 2 | At1g54160.1 | 68408.m05664 CCAAT-binding factor B subunit -related | 3 | 8 |
| 3 | At1g72830.1 | 68408.m07728 CCAAT-binding factor B subunit homolog -related | 3 | 8 |
Rice homologs
- gnl|BL_ORD_ID|3514_19526-19630_1-22
- gnl|BL_ORD_ID|3514_19526+19630_84-105
- gnl|BL_ORD_ID|3443_19526-19630_1-22
- gnl|BL_ORD_ID|3443_19526+19630_84-105
- gnl|BL_ORD_ID|2878_55663+55767_84-105
- gnl|BL_ORD_ID|2878_55663-55767_1-22
- gnl|BL_ORD_ID|2113_119291-119379_1-22
- gnl|BL_ORD_ID|2113_119291+119379_68-89
- gnl|BL_ORD_ID|2113_123478-123579_1-22
- gnl|BL_ORD_ID|2113_130010-130127_1-22
- gnl|BL_ORD_ID|2113_130010+130127_97-118
- gnl|BL_ORD_ID|990_58586-58674_1-22
- gnl|BL_ORD_ID|990_58586+58674_68-89
- gnl|BL_ORD_ID|990_62773-62874_1-22
- gnl|BL_ORD_ID|990_69305-69422_1-22
- gnl|BL_ORD_ID|990_69305+69422_97-118