| IGR sequence: | igr1679#chr4#x1=8848676#l=7609 |
|---|---|
| Mature miRNA sequence: | CGUGCCUGGCUCCCUGUAUGCCAC |
| encoded miRNA: | MIR75a |
| Precursor location: | 5316 - 5400 (positive strand) |
| precursor length: | 85 (32 basepairs) |
| MIR position: | 1 - 24 (5316 - 5339) |
| MIR length: | 24 (22 paired bases) |
| miRNA location TIGR v3: | chr4:8853991>8854075 |
| miRNA location TIGR v5: | chr4:9888997>9889081 |
| Folding energy: | -37.70 |
| BLAST hit against RFAM Atha miRNAs: | ath-MIR160b |
| Belongs to miRNAs-targets cluster: | cluster017 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ****
CGUGCCUGGC UCCCUGUAUG CCACAAGAAA ACAUCGAUUU AGUUUCAAAA UCGAUCACUA 60
(((((-(((( (-(((((((( ((((-((--- --(((((((( _______))) )))))--))-
GUGGCGUACA GAGUAGUCAA GCAUG 85
)))))))))) )-)-)))))- )))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g77850.1 | 68408.m08325 transcriptional factor B3 family | 4 | 7 |
| 2 | At2g28350.1 | 68409.m03117 auxin response transcription factor | 4 | 4 |
Rice homologs
- gnl|BL_ORD_ID|1495_132047-132132_63-86
- gnl|BL_ORD_ID|1495_132047+132132_1-24