| IGR sequence: | igr886#chr5#x1=3863724#l=4928 |
|---|---|
| Mature miRNA sequence: | UGACAGAAGAGAGUGAGCACACA |
| encoded miRNA: | MIR17d |
| Precursor location: | 3491 - 3586 (positive strand) |
| precursor length: | 96 (38 basepairs) |
| MIR position: | 1 - 23 (3491 - 3513) |
| MIR length: | 23 (22 paired bases) |
| miRNA location TIGR v3: | chr5:3867214>3867309 |
| miRNA location TIGR v5: | chr5:3867214>3867309 |
| Folding energy: | -51.60 |
| BLAST hit against RFAM Atha miRNAs: | ath-MIR156e |
| Belongs to miRNAs-targets cluster: | cluster019 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ***
UGACAGAAGA GAGUGAGCAC ACAUGGUGGU UUCUUGCAUG CUUUUUUGAU UAGGGUUUCA 60
:((((((((( (((((((((( (((((((--- (((--((((( ((((______ _))))---))
UGCUUGAAGC UAUGUGUGCU UACUCUCUCU CUGUCA 96
)))--))))) )))))))))) ))))))))-) ))))):
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g53160.1 | 68408.m05523 transcription factor -related | 2 | 8 |
| 2 | At2g42200.1 | 68409.m05466 squamosa-promoter binding protein -related | 3 | 8 |
| 3 | At2g42200.2 | 68409.m05467 squamosa-promoter binding protein -related | 3 | 8 |
| 4 | At3g57920.1 | 68410.m05967 squamosa promoter-binding protein homolog | 3 | 8 |
| 5 | At5g50570.1 | 68412.m07940 expressed protein | 3 | 8 |
| 6 | At5g50570.2 | 68412.m07941 expressed protein | 3 | 8 |
| 7 | At5g50670.1 | 68412.m05668 expressed protein | 3 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2024_146528-146637_88-110
- gnl|BL_ORD_ID|2024_146528+146637_1-23
- gnl|BL_ORD_ID|2021_81343+81452_1-23
- gnl|BL_ORD_ID|2021_81343-81452_88-110