PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_116
Name: INRNTPSADB
Description: Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box

Sequence: YTCANTYY
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_347	WOX14; WOX10	Not Available	61.64%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	59.87%
Matrix_512	HAT3	Not Available	59.86%
Motif_383	UPRE-III(bZIP60)	The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis	57.92%
Matrix_303	ATWOX13	Not Available	57.92%
Matrix_198	STZ; C2H2; AZF3	Not Available	57.40%
Motif_517	LEAFYATAG	Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis	56.52%
Motif_321	TATABOX5	TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis	56.25%
Motif_174	SREATMSD	sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis	56.25%
Matrix_436	AT3G49930; AZF1	Not Available	56.01%
Matrix_503	AT2G37430; AT3G53600	Not Available	55.52%
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	54.85%
Motif_193	GLK1	GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis	54.85%
Matrix_239	AT5G04390	Not Available	54.51%
Matrix_126	RBE	Not Available	54.31%
Matrix_379	RHL41	Not Available	54.29%
Matrix_279	HRS1	Not Available	54.27%
Matrix_425	TIFY2A	Not Available	53.76%
Matrix_78	AT3G45610	Not Available	52.00%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	51.94%
Motif_190	WUSATAg	Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis	51.94%
Motif_274	MYB1 binding site motif	Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein	51.83%
Matrix_165	KNAT1	Not Available	51.83%
Matrix_182	ATHB6	Not Available	51.77%
Matrix_300	bZIP68; bZIP16	Not Available	51.33%
Matrix_27	ATAIB; ATNIG1	Not Available	51.16%
Matrix_296	GBF2	Not Available	50.75%
Matrix_398	TBP2; ATTRB2	Not Available	50.61%
Matrix_248	ZFP5	Not Available	50.52%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	50.28%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	50.27%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	50.27%
Motif_40	MRNASTA2CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon	50.27%
Motif_199	GCN4OSGLUB1	GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression	50.27%
Motif_194	EBOXBNNAPA	E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1	50.27%
Motif_645	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.27%
Motif_80	AP1SV40	AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	50.27%
Motif_323	MYB1LEPR	Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))	50.27%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	50.27%
Matrix_64	PIF5	Not Available	50.11%
Motif_228	NODCON2GM	One of two putative nodulin consensus sequences; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules	50.00%
Motif_630	WBOXNTCHN48	W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco	50.00%