PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_279
Name: HRS1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_63	ARR10	Not Available	77.58%
Matrix_425	TIFY2A	Not Available	68.67%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	67.46%
Matrix_423	AT3G04030	Not Available	67.44%
Matrix_361	AT1G25550	Not Available	65.30%
Matrix_114	EPR1; AT3G10113	Not Available	64.76%
Matrix_248	ZFP5	Not Available	64.60%
Matrix_324	AT2G01060	Not Available	63.47%
Matrix_76	GATA10	Not Available	61.90%
Matrix_100	AT1G48610	Not Available	61.02%
Matrix_522	GATA11; GATA13	Not Available	60.32%
Matrix_177	ADOF2	Not Available	59.95%
Matrix_16	AT3G04450; PHL1	Not Available	59.89%
Matrix_157	LHY; RVE2	Not Available	59.84%
Matrix_69	AT2G03500	Not Available	59.36%
Matrix_67	GLK1	Not Available	58.96%
Motif_401	ARR1AT	ARR1-binding element found in Arabidopsis; ARR1 is a response regulator; AGATT is found in the promoter of rice non-symbiotic haemoglobin-2 (NSHB) gene	58.95%
Matrix_421	GLK1	Not Available	58.51%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	58.25%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	58.13%
Matrix_392	ARR2	Not Available	58.04%
Matrix_4	ARR14	Not Available	57.95%
Matrix_502	AT3G13040	Not Available	57.82%
Matrix_411	DOF5.6	Not Available	57.58%
Matrix_210	ARR1	Not Available	57.53%
Matrix_78	AT3G45610	Not Available	57.38%
Matrix_491	AT1G68670; AT3G25790	Not Available	57.15%
Matrix_336	AT5G08520	Not Available	57.01%
Matrix_512	HAT3	Not Available	56.99%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	56.80%
Matrix_380	ATMYR1	Not Available	56.64%
Matrix_162	AtPHR1	Not Available	56.56%
Motif_177	-300MOTIFZMZEIN	Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind	56.36%
Matrix_96	TMO6	Not Available	56.35%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	55.84%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	55.67%
Motif_20	HSELIKENTGLN2	HSE-like sequence in 5' upstream region of beta-1,3-glucanase gene (GLN2) of tobacco	55.55%
Matrix_97	APRR2	Not Available	54.88%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	54.78%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	54.27%
Matrix_241	HB-1; AT5G44180	Not Available	54.15%
Motif_193	GLK1	GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis	54.07%
Motif_80	AP1SV40	AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	53.97%
Motif_199	GCN4OSGLUB1	GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression	53.97%
Matrix_519	ATDOF2.4	Not Available	53.96%
Motif_517	LEAFYATAG	Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis	53.59%
Matrix_112	TBP2; TFIID-1	Not Available	53.42%
Matrix_198	STZ; C2H2; AZF3	Not Available	53.42%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	53.41%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	53.28%
Matrix_126	RBE	Not Available	53.16%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	53.09%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	53.02%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	52.69%
Matrix_239	AT5G04390	Not Available	52.60%
Matrix_487	AT1G29160	Not Available	52.58%
Matrix_347	WOX14; WOX10	Not Available	52.30%
Matrix_379	RHL41	Not Available	52.26%
Matrix_152	EIL1; AT5G65100	Not Available	52.08%
Matrix_503	AT2G37430; AT3G53600	Not Available	52.04%
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	52.00%
Motif_196	WBOXHVISO1	SUSIBA2 bind to W-box element in barley iso1 (encoding isoamylase1) promoter	51.95%
Matrix_436	AT3G49930; AZF1	Not Available	51.62%
Matrix_8	KAN1	Not Available	51.60%
Motif_630	WBOXNTCHN48	W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco	51.29%
Matrix_142	ZFP8	Not Available	50.99%
Matrix_303	ATWOX13	Not Available	50.83%
Matrix_35	YAB5; YAB3	Not Available	50.61%
Matrix_62	HAT5	Not Available	50.60%
Motif_688	AMMORESIVDCRNIA1	Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression	50.50%
Matrix_504	WRKY40	Not Available	50.43%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	50.22%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	50.21%
Matrix_415	WRKY27	Not Available	50.12%
Matrix_243	RAP2.12; RAP2.2	Not Available	50.11%