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Interactive Phylogenetics Module
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Family
HOM02SEM000336
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
AT5G64050
Arabidopsis thaliana
YGL105W
Saccharomyces cerevisiae strain S288C
Ec-03_001810
Ectocarpus siliculosus
Pp3c25_15060
Physcomitrella patens
tps09680
Thalassiosira pseudonana
AA0002G06540
Aureococcus anophagefferens
FBgn0036629
Drosophila melanogaster
Pp3c1_10010
Physcomitrella patens
gene12078
Fragilariopsis cylindrus
Cre07.g326950
Chlamydomonas reinhardtii
CC00G146110
Cyclotella cryptica
AA0005G01990
Aureococcus anophagefferens
emh490140
Emiliania huxleyi
SPAC30C2.04
Schizosaccharomyces pombe
CC00G11570
Cyclotella cryptica
Pp3c15_24000
Physcomitrella patens
tps33260
Thalassiosira pseudonana
gene2033
Fragilariopsis cylindrus
ccr154120
Chondrus crispus
AA0030G00240
Aureococcus anophagefferens
sya00G269110
Synedra acus
fso39700
Fistulifera solaris
tho161400
Thalassiosira oceanica
fso71400
Fistulifera solaris
PSNMU-V1.4_AUG-EV-PASAV3_0099320
Pseudo-nitzschia multistriata
Ec-17_003170
Ectocarpus siliculosus
sya00G56360
Synedra acus
gene9950
Fragilariopsis cylindrus
emh613500
Emiliania huxleyi
emh675260
Emiliania huxleyi
fso190180
Fistulifera solaris
emh202630
Emiliania huxleyi
tps84810
Thalassiosira pseudonana
Cre01.g046652
Chlamydomonas reinhardtii
Cre07.g313700
Chlamydomonas reinhardtii
tps01320
Thalassiosira pseudonana
YOL033W
Saccharomyces cerevisiae strain S288C
emh649600
Emiliania huxleyi
ps00G08000
Pseudo-nitzschia multiseries
CM09G00420
Cyanidioschyzon merolae
PSNMU-V1.4_AUG-EV-PASAV3_0031310
Pseudo-nitzschia multistriata
tho64940
Thalassiosira oceanica
Sro625_g177520
Seminavis robusta
PSNMU-V1.4_AUG-EV-PASAV3_0050130
Pseudo-nitzschia multistriata
ps00G12920
Pseudo-nitzschia multiseries
Naga_100004g19
Nannochloropsis gaditana
ps00G90130
Pseudo-nitzschia multiseries
gsu80310
Galdieria sulphuraria
gsu103970
Galdieria sulphuraria
emh572500
Emiliania huxleyi
tps84830
Thalassiosira pseudonana
emh131730
Emiliania huxleyi
Sro126_g060630
Seminavis robusta
Cre08.g364650
Chlamydomonas reinhardtii
ps00G84740
Pseudo-nitzschia multiseries
AA0002G03570
Aureococcus anophagefferens
sya00G80900
Synedra acus
tho38320
Thalassiosira oceanica
Ec-09_002760
Ectocarpus siliculosus
pte272170
Paramecium tetraurelia
FBgn0033351
Drosophila melanogaster
ENSG00000164022
Homo sapiens
CC00G49800
Cyclotella cryptica
ptri109240
Phaeodactylum tricornutum
ptri176990
Phaeodactylum tricornutum
SPAPB1A10.11c
Schizosaccharomyces pombe
Sro20_g014070
Seminavis robusta
gsu100370
Galdieria sulphuraria
Cre03.g145967
Chlamydomonas reinhardtii
PSNMU-V1.4_AUG-EV-PASAV3_0016650
Pseudo-nitzschia multistriata
AT2G40660
Arabidopsis thaliana
fso99600
Fistulifera solaris
AA0014G01570
Aureococcus anophagefferens
CM19G01920
Cyanidioschyzon merolae
Pp3c1_5820
Physcomitrella patens
fso109630
Fistulifera solaris
ccr155740
Chondrus crispus
gene678
Fragilariopsis cylindrus
gene13698
Fragilariopsis cylindrus
ENSG00000103356
Homo sapiens
fso64260
Fistulifera solaris
ps00G106110
Pseudo-nitzschia multiseries
sya00G221550
Synedra acus
ptri18330
Phaeodactylum tricornutum
Pp3c2_37890
Physcomitrella patens
WBGene00001338
Caenorhabditis elegans
CM04G00770
Cyanidioschyzon merolae
Ec-15_002360
Ectocarpus siliculosus
sya00G80910
Synedra acus
Naga_100017g70
Nannochloropsis gaditana
sya00G168530
Synedra acus
AT3G59980
Arabidopsis thaliana
AA0024G00230
Aureococcus anophagefferens
Naga_100018g48
Nannochloropsis gaditana
AA0016G00770
Aureococcus anophagefferens
pte275620
Paramecium tetraurelia
gene18232
Fragilariopsis cylindrus
tho368780
Thalassiosira oceanica
gsu100390
Galdieria sulphuraria
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (5 genes)
Thalassiosira oceanica (4 genes)
Pseudo-nitzschia multiseries (5 genes)
Fistulifera solaris (6 genes)
Fragilariopsis cylindrus (6 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (7 genes)
Ectocarpus siliculosus (4 genes)
Nannochloropsis gaditana (3 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (2 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (2 genes)
Schizosaccharomyces pombe (2 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (3 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (4 genes)
Emiliania huxleyi (7 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (3 genes)
Synedra acus (6 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (5 genes)
Pseudo-nitzschia multistriata (4 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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