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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tps205230
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tps205230
Thalassiosira pseudonana
0.0e+00
1253.8
663
100.0
CC00G33790
Cyclotella cryptica
1.0e-232
807.7
661
62.5
tho150100
Thalassiosira oceanica
1.2e-183
644.8
633
51.5
tho126780
Thalassiosira oceanica
7.3e-154
545.8
609
47.3
tho590620
Thalassiosira oceanica
3.1e-80
301.2
246
60.2
CC00G47860
Cyclotella cryptica
5.4e-72
273.9
244
54.1
CC00G33780
Cyclotella cryptica
3.0e-62
241.5
170
70.0
ccr56620
Chondrus crispus
1.8e-59
232.3
543
31.3
CC00G47850
Cyclotella cryptica
6.4e-57
223.8
210
52.9
Naga_100076g12
Nannochloropsis gaditana
2.7e-23
112.1
524
24.2
AT5G10820
Arabidopsis thaliana
1.0e-17
93.6
496
22.6
pte309560
Paramecium tetraurelia
2.2e-17
92.4
502
22.7
AT1G79710
Arabidopsis thaliana
7.1e-16
87.4
552
23.0
AT2G32040
Arabidopsis thaliana
1.2e-15
86.7
476
22.5
Pp3c25_9740
Physcomitrella patens
2.1e-15
85.9
506
25.1
Pp3c22_1880
Physcomitrella patens
6.0e-15
84.3
450
24.0
pte555540
Paramecium tetraurelia
1.9e-13
79.3
515
20.6
CM14G03180
Cyanidioschyzon merolae
3.7e-12
75.1
470
22.8
pte470920
Paramecium tetraurelia
1.4e-11
73.2
508
22.4
pte544980
Paramecium tetraurelia
2.4e-11
72.4
460
22.6
Pp3c10_2680
Physcomitrella patens
4.1e-11
71.6
463
21.6
gene8206
Fragilariopsis cylindrus
1.5e-10
69.7
424
21.0
AA0011G00190
Aureococcus anophagefferens
3.4e-10
68.6
189
30.2
tps62480
Thalassiosira pseudonana
7.6e-10
67.4
455
21.3
AA0010G02330
Aureococcus anophagefferens
1.3e-09
66.6
176
29.5
AT5G25050
Arabidopsis thaliana
2.9e-09
65.5
419
25.1
PSNMU-V1.4_AUG-EV-PASAV3_0017470
Pseudo-nitzschia multistriata
2.9e-09
65.5
418
21.1
PSNMU-V1.4_AUG-EV-PASAV3_0074050
Pseudo-nitzschia multistriata
2.9e-09
65.5
418
21.3
sya00G252880
Synedra acus
1.1e-08
63.5
452
21.7
emh565100
Emiliania huxleyi
1.4e-08
63.2
374
23.0
emh540610
Emiliania huxleyi
5.5e-08
61.2
119
35.3
Cre14.g615900
Chlamydomonas reinhardtii
7.2e-08
60.8
182
24.7
AT5G54860
Arabidopsis thaliana
9.3e-08
60.5
508
20.3
Pp3c19_4580
Physcomitrella patens
9.3e-08
60.5
262
24.8
pte581520
Paramecium tetraurelia
9.3e-08
60.5
493
19.9
ps00G72050
Pseudo-nitzschia multiseries
1.2e-07
60.1
436
22.2
ccr24800
Chondrus crispus
2.1e-07
59.3
191
26.7
Pp3c1_14900
Physcomitrella patens
6.1e-07
57.8
183
27.9
Cre06.g311000
Chlamydomonas reinhardtii
3.0e-06
55.5
227
24.2
Pp3c18_11000
Physcomitrella patens
3.9e-06
55.1
212
25.9
Naga_100074g5
Nannochloropsis gaditana
5.1e-06
54.7
131
29.0
AT5G25040
Arabidopsis thaliana
8.7e-06
53.9
117
28.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (4 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (6 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (5 genes)
Seminavis robusta (0 genes)
Synedra acus (1 genes)
Physcomitrella patens (6 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing