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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho10080
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho10080
Thalassiosira oceanica
2.2e-305
1048.9
552
100.0
CC00G77600
Cyclotella cryptica
7.5e-128
459.1
468
53.4
tps136040
Thalassiosira pseudonana
3.8e-95
350.5
323
56.0
fso34220
Fistulifera solaris
3.1e-81
304.3
452
38.3
ptri107360
Phaeodactylum tricornutum
2.5e-78
294.7
437
37.3
PSNMU-V1.4_AUG-EV-PASAV3_0001680
Pseudo-nitzschia multistriata
4.2e-78
293.9
475
38.7
Sro83_g044530
Seminavis robusta
4.2e-78
293.9
457
37.6
fso186320
Fistulifera solaris
5.1e-76
287.0
442
37.8
ps00G171910
Pseudo-nitzschia multiseries
4.3e-75
283.9
385
41.8
gene14812
Fragilariopsis cylindrus
1.6e-74
282.0
414
40.6
sya00G228010
Synedra acus
3.1e-73
277.7
431
38.3
Ec-27_004410
Ectocarpus siliculosus
4.2e-38
161.0
502
27.5
gsu35930
Galdieria sulphuraria
9.4e-38
159.8
382
29.6
Pp3c5_14220
Physcomitrella patens
1.8e-36
155.6
432
27.1
FBgn0038811
Drosophila melanogaster
3.0e-36
154.8
386
28.0
Naga_100165g3
Nannochloropsis gaditana
3.4e-35
151.4
557
24.2
AA0023G00610
Aureococcus anophagefferens
3.7e-34
147.9
278
33.8
YPL212C
Saccharomyces cerevisiae strain S288C
1.1e-33
146.4
369
29.3
SPCC126.03
Schizosaccharomyces pombe
1.8e-33
145.6
460
26.3
ENSG00000177192
Homo sapiens
3.5e-32
141.4
378
29.9
ccr184280
Chondrus crispus
2.9e-31
138.3
331
31.4
ccr146200
Chondrus crispus
6.5e-31
137.1
400
29.8
WBGene00004248
Caenorhabditis elegans
1.5e-30
136.0
415
26.7
Pp3c6_13480
Physcomitrella patens
1.9e-30
135.6
364
28.6
AT1G20370
Arabidopsis thaliana
5.5e-30
134.0
501
27.3
SPCC16C4.06c
Schizosaccharomyces pombe
8.0e-29
130.2
329
29.5
AT1G76120
Arabidopsis thaliana
6.8e-28
127.1
462
24.9
YGL063W
Saccharomyces cerevisiae strain S288C
1.3e-26
122.9
344
29.4
pte314750
Paramecium tetraurelia
8.3e-26
120.2
337
29.1
SPBC887.11
Schizosaccharomyces pombe
3.8e-23
111.3
435
24.4
Pp3c2_21310
Physcomitrella patens
8.0e-21
103.6
442
25.8
tho116640
Thalassiosira oceanica
1.2e-19
99.8
74
95.9
Naga_100009g102
Nannochloropsis gaditana
4.4e-19
97.8
225
32.9
AT2G30320
Arabidopsis thaliana
5.7e-19
97.4
382
23.0
gsu101490
Galdieria sulphuraria
2.9e-15
85.1
382
22.8
Ec-08_003150
Ectocarpus siliculosus
8.6e-15
83.6
153
31.4
pte449950
Paramecium tetraurelia
2.5e-14
82.0
294
28.2
Cre16.g691900
Chlamydomonas reinhardtii
2.1e-13
79.0
138
28.3
CM08G02510
Cyanidioschyzon merolae
3.6e-13
78.2
175
31.4
Cre03.g152950
Chlamydomonas reinhardtii
5.2e-12
74.3
138
32.6
Cre06.g292450
Chlamydomonas reinhardtii
1.5e-06
56.2
81
37.0
Cre13.g591501
Chlamydomonas reinhardtii
5.6e-06
54.3
135
28.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (2 genes)
Schizosaccharomyces pombe (3 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (3 genes)
Chlamydomonas reinhardtii (4 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing