Gene: tho10080 (Thalassiosira oceanica)

Overview top

Gene Identifier
tho10080
Transcript Identifier
tho10080.1
Gene Type
Coding gene
Location
To_g24491 : 13198-14853 : positive

Family Information

Homologous gene family
HOM02SEM001345
(41 genes in 25 species)
specific family

Descriptions

gene_descr
hypothetical protein
eggnog_description
Trna pseudouridine synthase

Identifiers

Type Value
pidEJK58925
UniprotK0S0R9
old_giTHAOC_20915

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
InterProRNA modification
GO:0010467
IEA
PLAZA Integrative Orthologygene expression SPCC126.03
GO:1900864
IEA
PLAZA Integrative Orthologymitochondrial RNA modification ENSG00000177192
GO:1990481
IEA
PLAZA Integrative OrthologymRNA pseudouridine synthesis YGL063W
GO:0000963
IEA
PLAZA Integrative Orthologymitochondrial RNA processing ENSG00000177192
GO:0006399
IEA
PLAZA Integrative OrthologytRNA metabolic process SPCC126.03
GO:0006396
IEA
PLAZA Integrative OrthologyRNA processing SPCC126.03
GO:0034660
IEA
PLAZA Integrative OrthologyncRNA metabolic process SPCC126.03
GO:0008033
IEA
PLAZA Integrative OrthologytRNA processing SPCC126.03
GO:0140053
IEA
PLAZA Integrative Orthologymitochondrial gene expression ENSG00000177192
GO:0090646
IEA
PLAZA Integrative Orthologymitochondrial tRNA processing ENSG00000177192
GO:0016556
IEA
PLAZA Integrative OrthologymRNA modification YGL063W
GO:0070525
IEA
PLAZA Integrative OrthologytRNA threonylcarbamoyladenosine metabolic process ENSG00000177192
GO:0070900
IEA
PLAZA Integrative Orthologymitochondrial tRNA modification ENSG00000177192
GO:0016073
IEA
PLAZA Integrative OrthologysnRNA metabolic process SPCC126.03
GO:0031119
IEA
PLAZA Integrative OrthologytRNA pseudouridine synthesis SPCC126.03
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process YGL063W
GO:0006400
IEA
PLAZA Integrative OrthologytRNA modification SPCC126.03
GO:0040031
IEA
PLAZA Integrative OrthologysnRNA modification SPCC126.03
GO:0031120
IEA
PLAZA Integrative OrthologysnRNA pseudouridine synthesis SPCC126.03
GO:0000959
IEA
PLAZA Integrative Orthologymitochondrial RNA metabolic process ENSG00000177192
GO:0070902
IEA
PLAZA Integrative Orthologymitochondrial tRNA pseudouridine synthesis ENSG00000177192
GO:0034470
IEA
PLAZA Integrative OrthologyncRNA processing SPCC126.03

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0000049
IEA
PLAZA Integrative OrthologytRNA binding ENSG00000177192
GO:0002153
IEA
PLAZA Integrative Orthologysteroid receptor RNA activator RNA binding ENSG00000177192
GO:0140098
IEA
PLAZA Integrative Orthologycatalytic activity, acting on RNA SPCC126.03
GO:0003729
IEA
PLAZA Integrative OrthologymRNA binding YPL212C
GO:0003727
IEA
PLAZA Integrative Orthologysingle-stranded RNA binding ENSG00000177192
GO:0106032
IEA
PLAZA Integrative OrthologysnRNA pseudouridine synthase activity SPCC126.03

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen ENSG00000177192
GO:0005739
IEA
PLAZA Integrative Orthologymitochondrion YGL063W
GO:0005759
IEA
PLAZA Integrative Orthologymitochondrial matrix ENSG00000177192
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPBC887.11
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm SPCC16C4.06c
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPBC887.11
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part ENSG00000177192
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPBC887.11
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part ENSG00000177192
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part AT1G20370
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen ENSG00000177192
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPBC887.11
GO:0044429
IEA
PLAZA Integrative Orthologymitochondrial part ENSG00000177192
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen ENSG00000177192
GO:0005829
IEA
PLAZA Integrative Orthologycytosol AT1G20370
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPBC887.11
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPBC887.11
GO:0005623
IEA
PLAZA Integrative Orthologycell SPBC887.11
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPBC887.11
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPBC887.11

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR020095Pseudouridine synthase I, TruA, C-terminal
IPR001406Pseudouridine synthase I, TruA
IPR020097Pseudouridine synthase I, TruA, alpha/beta domain
IPR020103Pseudouridine synthase, catalytic domain superfamily

No MapMan annotations defined for this gene.
KeggID Description
K06173truA, PUS1; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
K15452PUS2; mitochondrial tRNA pseudouridine27/28 synthase [EC:5.4.99.44]
No chloroplast target sequence found.