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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho04000
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho04000
Thalassiosira oceanica
1.9e-285
982.6
523
100.0
Sro963_g225230
Seminavis robusta
3.5e-58
227.6
299
46.5
gene2638
Fragilariopsis cylindrus
1.9e-56
221.9
326
40.2
PSNMU-V1.4_AUG-EV-PASAV3_0115720
Pseudo-nitzschia multistriata
1.8e-54
215.3
311
41.2
CC00G140450
Cyclotella cryptica
1.2e-34
149.4
297
35.0
fso44880
Fistulifera solaris
4.2e-27
124.4
300
31.0
fso18290
Fistulifera solaris
5.4e-27
124.0
300
31.0
Sro289_g109080
Seminavis robusta
1.0e-25
119.8
306
30.4
Naga_100212g5
Nannochloropsis gaditana
3.9e-25
117.9
325
30.8
ps00G113880
Pseudo-nitzschia multiseries
1.9e-24
115.5
300
29.3
ptri111480
Phaeodactylum tricornutum
1.9e-24
115.5
306
30.1
Ec-10_005610
Ectocarpus siliculosus
2.5e-24
115.2
269
30.9
ptri66200
Phaeodactylum tricornutum
2.5e-24
115.2
306
30.7
AA0003G01400
Aureococcus anophagefferens
9.6e-24
113.2
302
32.1
gene625
Fragilariopsis cylindrus
9.6e-24
113.2
306
29.1
sya00G249970
Synedra acus
3.6e-23
111.3
308
29.9
tps228890
Thalassiosira pseudonana
1.1e-22
109.8
300
30.3
PSNMU-V1.4_AUG-EV-PASAV3_0063790
Pseudo-nitzschia multistriata
3.4e-21
104.8
305
28.9
gene12489
Fragilariopsis cylindrus
5.8e-21
104.0
305
29.5
AT3G27170
Arabidopsis thaliana
6.4e-20
100.5
306
27.8
CC00G25630
Cyclotella cryptica
4.2e-19
97.8
344
26.7
Naga_100020g49
Nannochloropsis gaditana
1.2e-18
96.3
310
28.7
FBgn0033755
Drosophila melanogaster
6.0e-18
94.0
286
27.3
AT5G40890
Arabidopsis thaliana
1.3e-17
92.8
304
27.0
Pp3c2_27650
Physcomitrella patens
1.3e-17
92.8
301
27.6
Sro188_g081190
Seminavis robusta
3.3e-16
88.2
322
27.0
AT5G26240
Arabidopsis thaliana
4.3e-16
87.8
322
26.4
Pp3c9_2830
Physcomitrella patens
9.6e-16
86.7
368
26.1
Pp3c23_11120
Physcomitrella patens
1.3e-15
86.3
307
26.7
emh145850
Emiliania huxleyi
2.1e-15
85.5
317
27.1
WBGene00000533
Caenorhabditis elegans
3.6e-15
84.7
309
27.5
Pp3c23_5320
Physcomitrella patens
3.6e-15
84.7
306
25.8
AT5G49890
Arabidopsis thaliana
8.1e-15
83.6
315
25.7
Cre01.g038700
Chlamydomonas reinhardtii
1.4e-14
82.8
310
24.8
ENSG00000103249
Homo sapiens
2.4e-14
82.0
181
30.9
Pp3c10_14060
Physcomitrella patens
3.1e-14
81.6
376
25.8
emh167110
Emiliania huxleyi
1.2e-13
79.7
303
25.4
ps00G177210
Pseudo-nitzschia multiseries
9.9e-13
76.6
244
25.0
WBGene00000530
Caenorhabditis elegans
3.8e-12
74.7
184
30.4
WBGene00000528
Caenorhabditis elegans
1.4e-11
72.8
185
27.0
ENSG00000171365
Homo sapiens
1.4e-11
72.8
199
32.7
Sro804_g204950
Seminavis robusta
2.4e-11
72.0
180
27.2
ENSG00000011021
Homo sapiens
3.2e-11
71.6
146
34.2
Cre13.g574000
Chlamydomonas reinhardtii
4.2e-11
71.2
125
35.2
AT5G33280
Arabidopsis thaliana
5.5e-11
70.9
316
23.7
WBGene00000531
Caenorhabditis elegans
1.0e-09
66.6
180
27.2
emh489420
Emiliania huxleyi
1.9e-08
62.4
219
26.5
SPBC19C7.11
Schizosaccharomyces pombe
4.3e-08
61.2
193
28.5
Cre09.g402051
Chlamydomonas reinhardtii
1.3e-07
59.7
160
28.1
emh447310
Emiliania huxleyi
1.6e-07
59.3
181
28.7
FBgn0036566
Drosophila melanogaster
4.8e-07
57.8
197
30.5
SPBC887.02
Schizosaccharomyces pombe
4.8e-07
57.8
107
30.8
AA0017G01410
Aureococcus anophagefferens
8.1e-07
57.0
276
24.6
AA0026G00510
Aureococcus anophagefferens
1.4e-06
56.2
355
25.4
ccr113220
Chondrus crispus
2.4e-06
55.5
190
28.9
gsu61850
Galdieria sulphuraria
2.4e-06
55.5
154
28.6
YJR040W
Saccharomyces cerevisiae strain S288C
3.1e-06
55.1
150
28.7
ENSG00000188037
Homo sapiens
4.0e-06
54.7
181
26.5
CM17G01330
Cyanidioschyzon merolae
6.9e-06
53.9
184
27.7
tho120120
Thalassiosira oceanica
9.0e-06
53.5
109
33.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (3 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (4 genes)
Drosophila melanogaster (2 genes)
Caenorhabditis elegans (4 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (2 genes)
Arabidopsis thaliana (5 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (4 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (4 genes)
Synedra acus (1 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (3 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing