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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene4985
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene4985
Fragilariopsis cylindrus
2.8e-302
1038.9
642
100.0
PSNMU-V1.4_AUG-EV-PASAV3_0059780
Pseudo-nitzschia multistriata
2.7e-164
580.5
666
50.8
ps00G128710
Pseudo-nitzschia multiseries
2.1e-148
527.7
655
52.8
Sro968_g226040
Seminavis robusta
1.4e-128
461.8
649
42.7
ptri130350
Phaeodactylum tricornutum
6.6e-118
426.4
594
46.1
CC00G76420
Cyclotella cryptica
1.9e-112
408.3
608
41.3
fso53230
Fistulifera solaris
1.6e-103
378.6
643
39.5
fso07890
Fistulifera solaris
3.0e-102
374.4
646
38.7
gene5981
Fragilariopsis cylindrus
5.8e-98
360.1
319
71.2
gene5982
Fragilariopsis cylindrus
6.5e-81
303.5
222
75.7
Naga_100028g42
Nannochloropsis gaditana
3.9e-78
294.3
645
32.9
Cre09.g408464
Chlamydomonas reinhardtii
4.8e-76
287.3
591
33.0
sya00G214230
Synedra acus
8.5e-73
276.6
465
42.4
CM14G03090
Cyanidioschyzon merolae
9.7e-69
263.1
613
32.3
Ec-12_001090
Ectocarpus siliculosus
1.1e-53
213.0
695
32.7
AA0003G04380
Aureococcus anophagefferens
4.5e-50
201.1
636
28.0
YER049W
Saccharomyces cerevisiae strain S288C
6.5e-49
197.2
665
29.3
emh539730
Emiliania huxleyi
3.0e-46
188.3
595
29.2
SPBC6B1.08c
Schizosaccharomyces pombe
8.0e-39
163.7
594
25.6
Ec-12_001100
Ectocarpus siliculosus
1.5e-21
106.3
345
33.6
WBGene00015915
Caenorhabditis elegans
2.4e-19
99.0
607
21.3
emh43490
Emiliania huxleyi
3.6e-15
85.1
128
39.8
FBgn0265189
Drosophila melanogaster
2.9e-12
75.5
198
29.3
ENSG00000087263
Homo sapiens
8.3e-12
73.9
228
28.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing