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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ccr50240
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ccr50240
Chondrus crispus
3.1e-91
335.9
178
100.0
AA0035G00270
Aureococcus anophagefferens
6.4e-12
72.4
169
24.3
tps153290
Thalassiosira pseudonana
1.9e-11
70.9
169
27.8
Pp3c26_14310
Physcomitrella patens
3.2e-11
70.1
176
25.6
tho315500
Thalassiosira oceanica
4.1e-11
69.7
174
24.7
fso107150
Fistulifera solaris
2.1e-10
67.4
176
26.1
Naga_100058g23
Nannochloropsis gaditana
2.1e-10
67.4
172
29.7
fso194160
Fistulifera solaris
4.6e-10
66.2
176
26.7
SPCC1753.01c
Schizosaccharomyces pombe
1.3e-09
64.7
153
30.1
ENSG00000117748
Homo sapiens
8.6e-09
62.0
171
22.8
Ec-06_004810
Ectocarpus siliculosus
3.3e-08
60.1
200
24.0
CC00G89480
Cyclotella cryptica
9.5e-08
58.5
173
24.3
Cre02.g100000
Chlamydomonas reinhardtii
1.6e-07
57.8
161
31.1
AT3G02920
Arabidopsis thaliana
6.8e-06
52.4
159
28.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
No editing