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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c6_14810
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c6_14810
Physcomitrella patens
0.0e+00
1662.1
814
100.0
Pp3c5_8430
Physcomitrella patens
0.0e+00
1550.8
814
91.8
AT2G21790
Arabidopsis thaliana
0.0e+00
1385.5
817
81.2
Cre12.g492950
Chlamydomonas reinhardtii
0.0e+00
1239.6
877
69.3
gsu84250
Galdieria sulphuraria
0.0e+00
1147.5
827
66.4
CM13G03230
Cyanidioschyzon merolae
0.0e+00
1124.0
829
65.5
ENSG00000167325
Homo sapiens
0.0e+00
1117.1
814
65.5
ccr33860
Chondrus crispus
0.0e+00
1116.7
820
65.7
FBgn0011703
Drosophila melanogaster
0.0e+00
1108.6
821
64.6
Naga_100034g6
Nannochloropsis gaditana
0.0e+00
1104.4
814
65.0
YER070W
Saccharomyces cerevisiae strain S288C
0.0e+00
1092.0
792
65.8
fso45240
Fistulifera solaris
0.0e+00
1091.3
815
63.8
fso18700
Fistulifera solaris
0.0e+00
1087.0
815
63.7
SPAC1F7.05
Schizosaccharomyces pombe
0.0e+00
1087.0
832
61.8
tps128970
Thalassiosira pseudonana
0.0e+00
1087.0
827
61.9
Ec-21_002920
Ectocarpus siliculosus
0.0e+00
1086.2
814
64.4
ptri219800
Phaeodactylum tricornutum
0.0e+00
1084.7
827
62.4
CC00G39370
Cyclotella cryptica
0.0e+00
1082.4
825
61.8
sya00G221940
Synedra acus
0.0e+00
1078.9
822
62.9
Sro399_g134840
Seminavis robusta
0.0e+00
1077.0
824
62.3
WBGene00004391
Caenorhabditis elegans
2.7e-312
1072.4
789
65.1
YIL066C
Saccharomyces cerevisiae strain S288C
4.5e-312
1071.6
789
64.0
AA0021G00710
Aureococcus anophagefferens
6.3e-312
1071.2
814
62.0
gene13281
Fragilariopsis cylindrus
1.4e-311
1070.1
812
62.7
ps00G07360
Pseudo-nitzschia multiseries
1.5e-310
1066.6
776
64.3
PSNMU-V1.4_AUG-EV-PASAV3_0005380
Pseudo-nitzschia multistriata
2.4e-308
1059.3
794
63.5
AA0009G03050
Aureococcus anophagefferens
2.7e-307
1055.8
814
61.2
AA0006G00950
Aureococcus anophagefferens
6.6e-306
1051.2
814
60.9
Naga_100108g10
Nannochloropsis gaditana
3.3e-297
1022.3
791
61.4
tho73320
Thalassiosira oceanica
1.5e-294
1013.4
797
61.9
pte663260
Paramecium tetraurelia
3.9e-266
919.1
784
57.1
tps144930
Thalassiosira pseudonana
4.0e-263
909.1
840
53.6
tho107100
Thalassiosira oceanica
3.2e-260
899.4
868
52.9
sya00G162990
Synedra acus
1.6e-259
897.1
843
54.0
Ec-11_002180
Ectocarpus siliculosus
3.5e-259
896.0
663
65.2
ps00G68260
Pseudo-nitzschia multiseries
2.5e-257
889.8
841
54.2
gene2100
Fragilariopsis cylindrus
1.2e-254
880.9
807
54.3
fso30680
Fistulifera solaris
1.2e-254
880.9
814
54.7
gene6322
Fragilariopsis cylindrus
2.0e-254
880.2
815
54.7
PSNMU-V1.4_AUG-EV-PASAV3_0064210
Pseudo-nitzschia multistriata
1.0e-253
877.9
801
55.8
fso119370
Fistulifera solaris
1.1e-249
864.4
770
56.0
Sro785_g202090
Seminavis robusta
5.5e-244
845.5
835
52.5
Ec-06_005120
Ectocarpus siliculosus
1.2e-243
844.3
773
54.1
CC00G109190
Cyclotella cryptica
4.1e-239
829.3
871
49.4
emh680610
Emiliania huxleyi
1.9e-236
820.5
773
53.3
pte753340
Paramecium tetraurelia
5.7e-225
782.3
584
63.0
ptri146410
Phaeodactylum tricornutum
3.1e-223
776.5
705
56.3
emh517270
Emiliania huxleyi
1.7e-192
674.5
511
63.8
AA0016G01460
Aureococcus anophagefferens
3.6e-187
656.8
451
67.2
AA0644G00010
Aureococcus anophagefferens
8.2e-147
522.7
359
68.0
gsu05760
Galdieria sulphuraria
6.7e-125
449.9
653
40.4
emh07130
Emiliania huxleyi
1.8e-85
318.9
262
59.5
Ec-17_003700
Ectocarpus siliculosus
2.8e-78
295.0
241
56.4
Pp3c22_3180
Physcomitrella patens
1.2e-70
269.6
156
85.3
AA0044G00360
Aureococcus anophagefferens
1.1e-69
266.5
228
55.3
emh48490
Emiliania huxleyi
2.8e-62
241.9
255
48.2
sya00G266120
Synedra acus
5.3e-45
184.5
476
28.4
AA0009G03030
Aureococcus anophagefferens
1.6e-38
162.9
149
49.0
ps00G85260
Pseudo-nitzschia multiseries
6.2e-38
161.0
135
57.0
emh417920
Emiliania huxleyi
6.5e-35
151.0
147
50.3
AA0044G00350
Aureococcus anophagefferens
5.1e-32
141.4
85
70.6
pte753360
Paramecium tetraurelia
1.3e-30
136.7
161
46.0
Pp3c22_4130
Physcomitrella patens
3.4e-28
128.6
67
91.0
ptri146390
Phaeodactylum tricornutum
1.4e-26
123.2
113
53.1
emh517290
Emiliania huxleyi
4.6e-17
91.7
87
54.0
tho243460
Thalassiosira oceanica
9.7e-15
84.0
102
45.1
Ec-11_002170
Ectocarpus siliculosus
1.4e-10
70.1
56
55.4
emh551450
Emiliania huxleyi
4.4e-07
58.5
42
59.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (8 genes)
Ectocarpus siliculosus (5 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (2 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (7 genes)
Paramecium tetraurelia (3 genes)
Seminavis robusta (2 genes)
Synedra acus (3 genes)
Physcomitrella patens (4 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing