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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Pp3c3_24920
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Pp3c3_24920
Physcomitrella patens
0.0e+00
1092.8
568
100.0
Pp3c10_22920
Physcomitrella patens
2.1e-200
700.3
574
66.9
AT1G78420
Arabidopsis thaliana
3.4e-65
251.1
373
41.8
Pp3c3_28300
Physcomitrella patens
3.1e-58
228.0
138
76.8
AT1G17145
Arabidopsis thaliana
2.7e-54
214.9
142
71.8
Cre26.g756897
Chlamydomonas reinhardtii
6.0e-30
134.0
129
55.0
CM12G01760
Cyanidioschyzon merolae
3.2e-23
111.7
162
40.1
Naga_100003g130
Nannochloropsis gaditana
2.7e-22
108.6
110
45.5
Sro79_g042730
Seminavis robusta
1.5e-20
102.8
128
43.0
emh346730
Emiliania huxleyi
9.6e-20
100.1
115
44.3
emh120280
Emiliania huxleyi
9.6e-20
100.1
115
44.3
CC00G199220
Cyclotella cryptica
2.1e-19
99.0
121
43.8
ptri59100
Phaeodactylum tricornutum
2.1e-19
99.0
127
45.7
tps96700
Thalassiosira pseudonana
2.1e-19
99.0
137
41.6
fso130480
Fistulifera solaris
5.0e-16
87.8
128
38.3
sya00G55980
Synedra acus
6.5e-16
87.4
133
39.8
fso105080
Fistulifera solaris
8.5e-16
87.0
128
38.3
tho221620
Thalassiosira oceanica
1.1e-15
86.7
127
34.6
gsu56280
Galdieria sulphuraria
7.9e-14
80.5
136
32.4
gsu15850
Galdieria sulphuraria
9.1e-10
67.0
74
43.2
gsu49280
Galdieria sulphuraria
5.9e-09
64.3
107
29.9
gsu26590
Galdieria sulphuraria
2.2e-08
62.4
104
33.7
SPBC25B2.03
Schizosaccharomyces pombe
5.0e-08
61.2
73
37.0
YMR140W
Saccharomyces cerevisiae strain S288C
1.4e-07
59.7
80
36.2
gsu15830
Galdieria sulphuraria
1.6e-06
56.2
91
35.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (5 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (3 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing