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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G72160
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G72160
Cyclotella cryptica
0.0e+00
1281.5
655
100.0
tps27790
Thalassiosira pseudonana
8.5e-195
681.8
509
72.3
Sro6_g005140
Seminavis robusta
9.3e-93
342.8
437
46.5
gene4449
Fragilariopsis cylindrus
2.5e-85
318.2
472
41.5
ptri26120
Phaeodactylum tricornutum
4.2e-85
317.4
643
36.4
ps00G146670
Pseudo-nitzschia multiseries
9.3e-85
316.2
446
44.2
fso117030
Fistulifera solaris
1.6e-81
305.4
641
35.3
fso72960
Fistulifera solaris
3.2e-77
291.2
467
40.3
gene16176
Fragilariopsis cylindrus
4.6e-76
287.3
431
40.4
sya00G39610
Synedra acus
6.5e-70
266.9
428
37.9
PSNMU-V1.4_AUG-EV-PASAV3_0044820
Pseudo-nitzschia multistriata
1.4e-67
259.2
406
40.1
Naga_100011g51
Nannochloropsis gaditana
4.7e-52
207.6
490
33.7
AA0054G00050
Aureococcus anophagefferens
6.6e-38
160.6
410
31.7
Pp3c16_2890
Physcomitrella patens
6.1e-36
154.1
468
29.5
Cre04.g217922
Chlamydomonas reinhardtii
2.3e-35
152.1
431
29.2
ccr128240
Chondrus crispus
1.3e-33
146.4
434
28.6
ENSG00000162298
Homo sapiens
2.4e-32
142.1
430
28.8
AT1G65040
Arabidopsis thaliana
8.6e-30
133.7
436
25.9
FBgn0039875
Drosophila melanogaster
1.9e-29
132.5
491
27.1
AT3G16090
Arabidopsis thaliana
9.5e-29
130.2
544
25.0
CM07G01900
Cyanidioschyzon merolae
4.4e-26
121.3
488
26.6
WBGene00004768
Caenorhabditis elegans
2.0e-23
112.5
422
25.8
gsu122750
Galdieria sulphuraria
6.6e-22
107.5
419
25.8
gsu122730
Galdieria sulphuraria
8.3e-17
90.5
409
24.7
emh327260
Emiliania huxleyi
2.7e-15
85.5
219
30.6
emh103250
Emiliania huxleyi
2.7e-15
85.5
219
30.6
SPBC17D11.02c
Schizosaccharomyces pombe
3.9e-14
81.6
155
31.6
Ec-28_002940
Ectocarpus siliculosus
1.9e-13
79.3
109
39.4
emh266500
Emiliania huxleyi
8.1e-12
73.9
82
47.6
ENSG00000159461
Homo sapiens
2.3e-11
72.4
122
40.2
Cre13.g580750
Chlamydomonas reinhardtii
2.4e-08
62.4
78
41.0
gene20067
Fragilariopsis cylindrus
7.1e-08
60.8
104
34.6
sya00G33980
Synedra acus
1.2e-07
60.1
60
53.3
pte729470
Paramecium tetraurelia
2.7e-07
58.9
94
31.9
WBGene00009164
Caenorhabditis elegans
6.0e-07
57.8
88
33.0
AT4G30370
Arabidopsis thaliana
1.3e-06
56.6
57
38.6
AT2G40830
Arabidopsis thaliana
1.7e-06
56.2
46
41.3
AT3G60220
Arabidopsis thaliana
2.3e-06
55.8
57
38.6
WBGene00013651
Caenorhabditis elegans
2.3e-06
55.8
42
45.2
AT2G18670
Arabidopsis thaliana
3.0e-06
55.5
46
41.3
AT3G48030
Arabidopsis thaliana
3.9e-06
55.1
49
34.7
AT3G10815
Arabidopsis thaliana
5.1e-06
54.7
100
28.0
Pp3c6_21080
Physcomitrella patens
5.1e-06
54.7
50
42.0
AT1G14200
Arabidopsis thaliana
6.6e-06
54.3
66
31.8
AT3G20395
Arabidopsis thaliana
6.6e-06
54.3
50
40.0
AT3G56580
Arabidopsis thaliana
6.6e-06
54.3
56
35.7
AA0004G02410
Aureococcus anophagefferens
8.6e-06
53.9
51
43.1
AA0006G05410
Aureococcus anophagefferens
8.6e-06
53.9
51
39.2
AA0014G01990
Aureococcus anophagefferens
8.6e-06
53.9
59
39.0
CC00G103460
Cyclotella cryptica
8.6e-06
53.9
76
35.5
tho48040
Thalassiosira oceanica
8.6e-06
53.9
49
42.9
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (4 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (3 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (11 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (1 genes)
Synedra acus (2 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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