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Interactive Phylogenetics Module
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G60940
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G60940
Arabidopsis thaliana
3.3e-248
858.6
430
100.0
Pp3c18_4200
Physcomitrella patens
8.7e-148
525.0
425
60.7
FBgn0039867
Drosophila melanogaster
4.0e-52
207.2
322
33.2
WBGene00000773
Caenorhabditis elegans
1.5e-51
205.3
416
31.5
ENSG00000101138
Homo sapiens
1.1e-46
189.1
423
28.8
emh395610
Emiliania huxleyi
9.0e-36
152.9
305
30.8
ps00G159590
Pseudo-nitzschia multiseries
2.8e-13
78.2
235
26.0
SPBC6B1.10
Schizosaccharomyces pombe
3.1e-12
74.7
322
23.3
gene14213
Fragilariopsis cylindrus
2.0e-11
72.0
260
24.2
AA0017G00230
Aureococcus anophagefferens
2.2e-10
68.6
331
24.5
CC00G145360
Cyclotella cryptica
3.6e-08
61.2
241
23.2
Naga_100324g3
Nannochloropsis gaditana
3.6e-08
61.2
251
24.3
pte449650
Paramecium tetraurelia
3.6e-08
61.2
319
22.3
Pp3c19_4130
Physcomitrella patens
4.6e-08
60.8
308
23.7
ps00G172440
Pseudo-nitzschia multiseries
1.8e-07
58.9
231
22.1
emh499270
Emiliania huxleyi
2.3e-07
58.5
281
21.7
Naga_100004g35
Nannochloropsis gaditana
2.3e-07
58.5
268
21.6
SPAC343.04c
Schizosaccharomyces pombe
2.3e-07
58.5
142
22.5
Pp3c2_19830
Physcomitrella patens
5.1e-07
57.4
254
22.4
WBGene00001513
Caenorhabditis elegans
6.7e-07
57.0
264
22.0
pte271160
Paramecium tetraurelia
8.8e-07
56.6
224
23.7
sya00G205420
Synedra acus
8.8e-07
56.6
205
20.0
Pp3c23_12950
Physcomitrella patens
1.1e-06
56.2
125
28.8
pte285970
Paramecium tetraurelia
1.9e-06
55.5
156
25.6
pte510440
Paramecium tetraurelia
1.9e-06
55.5
156
25.6
Cre04.g226450
Chlamydomonas reinhardtii
2.5e-06
55.1
100
32.0
WBGene00011051
Caenorhabditis elegans
4.3e-06
54.3
126
25.4
PSNMU-V1.4_AUG-EV-PASAV3_0122660
Pseudo-nitzschia multistriata
4.3e-06
54.3
187
22.5
Pp3c10_3720
Physcomitrella patens
5.7e-06
53.9
252
21.8
Pp3c6_22670
Physcomitrella patens
5.7e-06
53.9
243
20.6
tho296180
Thalassiosira oceanica
7.4e-06
53.5
241
23.2
Naga_100083g16
Nannochloropsis gaditana
9.7e-06
53.1
240
20.4
pte436440
Paramecium tetraurelia
9.7e-06
53.1
223
19.7
tps153710
Thalassiosira pseudonana
9.7e-06
53.1
168
26.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (3 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (3 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (2 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (5 genes)
Seminavis robusta (0 genes)
Synedra acus (1 genes)
Physcomitrella patens (6 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing