Gene: AT5G60940 (Arabidopsis thaliana)

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Gene Identifier
AT5G60940
Transcript Identifier
AT5G60940.1
Gene Type
Coding gene
Location
5 : 24523092-24525655 : positive

Family Information

Homologous gene family
HOM02SEM013123
(6 genes in 6 species)
specific family
Orthologous gene family
ORTHO02SEM010644
(6 genes in 6 species)
specific family

Descriptions

Description
Transducin/WD40 repeat-like superfamily protein
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Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071704
IEA
PLAZA Integrative Orthologyorganic substance metabolic process ENSG00000101138
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process ENSG00000101138
GO:0031124
IEA
PLAZA Integrative OrthologymRNA 3'-end processing ENSG00000101138
GO:0031123
IEA
PLAZA Integrative OrthologyRNA 3'-end processing ENSG00000101138
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process ENSG00000101138
GO:0000375
IEA
PLAZA Integrative OrthologyRNA splicing, via transesterification reactions ENSG00000101138
GO:0009987
IEA
PLAZA Integrative Orthologycellular process ENSG00000101138
GO:0006353
IEA
PLAZA Integrative OrthologyDNA-templated transcription, termination ENSG00000101138
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing ENSG00000101138
GO:0006396
IEA
PLAZA Integrative OrthologyRNA processing ENSG00000101138
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process ENSG00000101138
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated ENSG00000101138
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process ENSG00000101138
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process ENSG00000101138
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process ENSG00000101138
GO:0044260
IEA
PLAZA Integrative Orthologycellular macromolecule metabolic process ENSG00000101138
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process ENSG00000101138
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process ENSG00000101138
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process ENSG00000101138
GO:0043170
IEA
PLAZA Integrative Orthologymacromolecule metabolic process ENSG00000101138
GO:0000398
IEA
PLAZA Integrative OrthologymRNA splicing, via spliceosome ENSG00000101138
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process ENSG00000101138
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process ENSG00000101138
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process ENSG00000101138
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process ENSG00000101138
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process ENSG00000101138
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription ENSG00000101138
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process ENSG00000101138
GO:0010467
IEA
PLAZA Integrative Orthologygene expression ENSG00000101138
GO:0006807
IEA
PLAZA Integrative Orthologynitrogen compound metabolic process ENSG00000101138
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process ENSG00000101138
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process ENSG00000101138
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process ENSG00000101138
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process ENSG00000101138
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process ENSG00000101138
GO:0000377
IEA
PLAZA Integrative OrthologyRNA splicing, via transesterification reactions with bulged adenosine as nucleophile ENSG00000101138
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process ENSG00000101138
GO:0006369
IEA
PLAZA Integrative Orthologytermination of RNA polymerase II transcription ENSG00000101138
GO:0044238
IEA
PLAZA Integrative Orthologyprimary metabolic process ENSG00000101138
GO:0006366
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase II ENSG00000101138
GO:0008380
IEA
PLAZA Integrative OrthologyRNA splicing ENSG00000101138

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0000166
ISS
Gene Ontologynucleotide binding1
GO:0003676
IEA
PLAZA Integrative Orthologynucleic acid binding ENSG00000101138
GO:0003723
IEA
PLAZA Integrative OrthologyRNA binding ENSG00000101138

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex2 3
GO:0005834
ISS
Gene Ontologyheterotrimeric G-protein complex1
GO:0005737
ISM
Gene Ontologycytoplasm4
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen ENSG00000101138
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part ENSG00000101138
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part ENSG00000101138
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen ENSG00000101138
GO:0005849
IEA
PLAZA Integrative OrthologymRNA cleavage factor complex FBgn0039867
GO:0005848
IEA
PLAZA Integrative OrthologymRNA cleavage stimulating factor complex FBgn0039867
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000101138
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen ENSG00000101138
GO:0044451
IEA
PLAZA Integrative Orthologynucleoplasm part FBgn0039867
GO:0005634
IEA
PLAZA Integrative Orthologynucleus ENSG00000101138
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part ENSG00000101138
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen ENSG00000101138
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle ENSG00000101138
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle ENSG00000101138
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle ENSG00000101138
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle ENSG00000101138

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015943WD40/YVTN repeat-like-containing domain superfamily
IPR001680WD40 repeat
IPR019775WD40 repeat, conserved site
IPR017986WD40-repeat-containing domain

No MapMan annotations defined for this gene.
KeggID Description
K14406CSTF1; cleavage stimulation factor subunit 1
No chloroplast target sequence found.