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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G52520
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G52520
Arabidopsis thaliana
0.0e+00
1093.2
544
100.0
Pp3c21_580
Physcomitrella patens
6.7e-222
771.5
551
68.8
Cre09.g406200
Chlamydomonas reinhardtii
5.7e-197
688.7
478
67.2
gsu68560
Galdieria sulphuraria
9.6e-136
485.3
504
49.2
AA0001G05430
Aureococcus anophagefferens
1.1e-128
461.8
501
47.7
Naga_100042g42
Nannochloropsis gaditana
1.8e-126
454.5
531
45.2
CM10G00990
Cyanidioschyzon merolae
5.9e-125
449.5
570
44.4
ccr148240
Chondrus crispus
2.5e-123
444.1
471
48.2
gene16475
Fragilariopsis cylindrus
1.6e-122
441.4
509
45.8
PSNMU-V1.4_AUG-EV-PASAV3_0083450
Pseudo-nitzschia multistriata
7.9e-122
439.1
510
46.1
fso42340
Fistulifera solaris
2.3e-121
437.6
510
46.1
tps99010
Thalassiosira pseudonana
1.1e-120
435.3
524
44.8
fso20350
Fistulifera solaris
1.5e-120
434.9
510
45.9
tho229780
Thalassiosira oceanica
9.7e-120
432.2
509
44.4
Sro213_g088490
Seminavis robusta
6.9e-118
426.0
508
44.9
CC00G91550
Cyclotella cryptica
1.0e-116
422.2
507
44.6
sya00G52470
Synedra acus
1.7e-116
421.4
526
42.8
Pp3c2_3850
Physcomitrella patens
5.0e-116
419.9
494
44.7
ptri230410
Phaeodactylum tricornutum
8.5e-116
419.1
533
43.9
ps00G23270
Pseudo-nitzschia multiseries
3.0e-113
410.6
500
45.4
tps220550
Thalassiosira pseudonana
1.7e-111
404.8
517
40.6
Sro27_g018090
Seminavis robusta
2.8e-111
404.1
504
40.3
CC00G78430
Cyclotella cryptica
6.3e-111
402.9
504
41.1
Naga_100050g6
Nannochloropsis gaditana
1.4e-110
401.7
502
41.2
Ec-08_005570
Ectocarpus siliculosus
2.4e-110
401.0
497
42.3
Cre10.g429100
Chlamydomonas reinhardtii
3.1e-110
400.6
491
42.2
fso180700
Fistulifera solaris
3.1e-110
400.6
505
41.0
ccr86180
Chondrus crispus
1.6e-109
398.3
515
41.4
gene3183
Fragilariopsis cylindrus
3.5e-109
397.1
497
40.4
fso185290
Fistulifera solaris
3.5e-109
397.1
505
40.6
AT3G62120
Arabidopsis thaliana
5.9e-109
396.4
486
42.2
ptri19750
Phaeodactylum tricornutum
4.2e-107
390.2
505
40.8
sya00G22750
Synedra acus
4.2e-107
390.2
505
45.1
gene20932
Fragilariopsis cylindrus
8.0e-106
386.0
428
43.0
sya00G108180
Synedra acus
1.4e-105
385.2
504
40.3
tho310420
Thalassiosira oceanica
3.0e-105
384.0
529
40.1
CM19G00240
Cyanidioschyzon merolae
5.2e-105
383.3
474
42.8
ENSG00000136628
Homo sapiens
8.8e-105
382.5
500
39.0
WBGene00004189
Caenorhabditis elegans
2.6e-104
380.9
497
39.0
AA0034G00850
Aureococcus anophagefferens
3.3e-104
380.6
514
39.3
pte621940
Paramecium tetraurelia
5.7e-104
379.8
504
39.9
pte782050
Paramecium tetraurelia
1.3e-103
378.6
504
39.7
pte720140
Paramecium tetraurelia
4.1e-102
373.6
504
39.1
pte785740
Paramecium tetraurelia
5.3e-102
373.2
505
39.4
ps00G142430
Pseudo-nitzschia multiseries
4.5e-101
370.2
487
39.6
gsu90040
Galdieria sulphuraria
5.9e-101
369.8
475
41.5
SPBC19C7.06
Schizosaccharomyces pombe
7.7e-101
369.4
550
38.7
YHR020W
Saccharomyces cerevisiae strain S288C
1.0e-100
369.0
506
39.5
ps00G181630
Pseudo-nitzschia multiseries
2.2e-100
367.9
492
40.9
FBgn0005674
Drosophila melanogaster
2.4e-94
347.8
494
37.0
emh540450
Emiliania huxleyi
1.6e-93
345.1
537
39.1
PSNMU-V1.4_AUG-EV-PASAV3_0088140
Pseudo-nitzschia multistriata
1.6e-82
308.5
426
41.5
PSNMU-V1.4_AUG-EV-PASAV3_0054880
Pseudo-nitzschia multistriata
1.0e-23
113.2
230
29.1
AT5G10880
Arabidopsis thaliana
1.6e-21
105.9
229
31.9
Cre07.g351300
Chlamydomonas reinhardtii
1.9e-11
72.4
114
33.3
emh472320
Emiliania huxleyi
2.9e-07
58.5
101
36.6
Cre12.g549850
Chlamydomonas reinhardtii
1.1e-06
56.6
60
38.3
AA0001G01610
Aureococcus anophagefferens
4.2e-06
54.7
82
40.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (3 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (4 genes)
Seminavis robusta (2 genes)
Synedra acus (3 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (4 genes)
Pseudo-nitzschia multistriata (3 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing