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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT4G04350
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT4G04350
Arabidopsis thaliana
0.0e+00
2015.7
974
100.0
Pp3c7_13710
Physcomitrella patens
0.0e+00
1315.8
882
69.3
Cre13.g578451
Chlamydomonas reinhardtii
0.0e+00
1182.9
900
63.6
CM16G02060
Cyanidioschyzon merolae
6.9e-302
1038.1
942
55.3
ccr107600
Chondrus crispus
6.7e-289
995.0
854
56.4
gsu15690
Galdieria sulphuraria
2.0e-285
983.4
896
53.2
tps109180
Thalassiosira pseudonana
5.9e-253
875.5
879
50.4
fso10660
Fistulifera solaris
8.0e-250
865.1
901
49.8
sya00G264960
Synedra acus
1.0e-249
864.8
934
48.7
fso131500
Fistulifera solaris
4.4e-248
859.4
901
49.6
ps00G02610
Pseudo-nitzschia multiseries
5.7e-248
859.0
904
49.0
sya00G65530
Synedra acus
1.7e-247
857.4
901
48.7
Sro497_g154690
Seminavis robusta
4.1e-246
852.8
932
48.1
ptri70730
Phaeodactylum tricornutum
5.9e-245
849.0
928
48.4
PSNMU-V1.4_AUG-EV-PASAV3_0031170
Pseudo-nitzschia multistriata
5.0e-244
845.9
910
48.4
gene17664
Fragilariopsis cylindrus
6.6e-244
845.5
947
47.7
Naga_100001g125
Nannochloropsis gaditana
8.3e-239
828.6
902
48.8
AA0012G01560
Aureococcus anophagefferens
9.2e-238
825.1
907
47.9
CC00G197630
Cyclotella cryptica
8.3e-231
802.0
866
48.0
tho57280
Thalassiosira oceanica
2.1e-229
797.3
966
44.7
emh678930
Emiliania huxleyi
1.4e-206
721.5
886
45.1
SPAC4G8.09
Schizosaccharomyces pombe
7.2e-158
559.7
901
38.2
ENSG00000011376
Homo sapiens
9.2e-129
463.0
878
33.7
FBgn0027085
Drosophila melanogaster
4.9e-106
387.5
925
31.0
WBGene00003074
Caenorhabditis elegans
1.8e-84
315.8
871
28.6
sya00G34300
Synedra acus
7.1e-73
277.3
516
33.5
fso117450
Fistulifera solaris
1.3e-37
160.2
932
22.9
fso162820
Fistulifera solaris
4.1e-36
155.2
893
22.5
sya00G102440
Synedra acus
4.1e-36
155.2
204
40.2
PSNMU-V1.4_AUG-EV-PASAV3_0021780
Pseudo-nitzschia multistriata
1.7e-34
149.8
906
23.2
Sro427_g140590
Seminavis robusta
2.2e-34
149.4
909
22.8
CC00G35080
Cyclotella cryptica
7.2e-33
144.4
965
22.5
ptri91670
Phaeodactylum tricornutum
6.1e-32
141.4
945
22.4
fso68450
Fistulifera solaris
1.4e-31
140.2
917
22.2
ps00G87410
Pseudo-nitzschia multiseries
3.0e-31
139.0
868
23.2
tps72660
Thalassiosira pseudonana
5.2e-31
138.3
860
22.6
Naga_100007g121
Nannochloropsis gaditana
6.8e-31
137.9
970
21.1
gene8182
Fragilariopsis cylindrus
1.2e-30
137.1
864
22.2
fso65690
Fistulifera solaris
9.8e-30
134.0
922
21.3
tho02920
Thalassiosira oceanica
2.8e-29
132.5
911
21.6
sya00G260170
Synedra acus
1.4e-28
130.2
963
22.2
Cre07.g350500
Chlamydomonas reinhardtii
4.5e-27
125.2
885
21.4
ptri212990
Phaeodactylum tricornutum
2.3e-26
122.9
924
20.9
CM05G00470
Cyanidioschyzon merolae
5.0e-26
121.7
906
20.6
Pp3c12_13790
Physcomitrella patens
1.6e-24
116.7
967
21.0
emh459420
Emiliania huxleyi
4.7e-24
115.2
529
25.1
FBgn0036569
Drosophila melanogaster
1.4e-23
113.6
909
21.7
Ec-12_005070
Ectocarpus siliculosus
3.0e-23
112.5
562
23.1
emh628500
Emiliania huxleyi
6.8e-23
111.3
514
22.8
emh575830
Emiliania huxleyi
6.8e-23
111.3
514
22.8
WBGene00006936
Caenorhabditis elegans
7.5e-22
107.8
894
20.7
Cre12.g537100
Chlamydomonas reinhardtii
1.3e-21
107.1
511
23.1
gsu37250
Galdieria sulphuraria
2.2e-21
106.3
512
24.2
SPAC4A8.08c
Schizosaccharomyces pombe
2.2e-21
106.3
495
24.2
YGR094W
Saccharomyces cerevisiae strain S288C
4.9e-21
105.1
516
21.7
SPBC1709.02c
Schizosaccharomyces pombe
6.3e-21
104.8
508
23.8
gsu56540
Galdieria sulphuraria
1.4e-20
103.6
903
21.2
gsu56560
Galdieria sulphuraria
1.4e-20
103.6
903
21.2
ptri228310
Phaeodactylum tricornutum
1.8e-20
103.2
937
20.5
Pp3c2_9830
Physcomitrella patens
3.2e-20
102.4
945
20.7
ccr174940
Chondrus crispus
4.1e-20
102.1
896
22.2
CC00G87360
Cyclotella cryptica
4.1e-20
102.1
519
23.3
Sro408_g136830
Seminavis robusta
7.0e-20
101.3
550
23.6
FBgn0027079
Drosophila melanogaster
2.7e-19
99.4
386
24.6
pte532690
Paramecium tetraurelia
2.7e-19
99.4
902
19.2
gene17222
Fragilariopsis cylindrus
3.5e-19
99.0
488
23.4
AA0005G05900
Aureococcus anophagefferens
7.8e-19
97.8
489
21.7
AT5G16715
Arabidopsis thaliana
7.8e-19
97.8
567
23.8
ps00G171470
Pseudo-nitzschia multiseries
7.8e-19
97.8
528
23.7
sya00G16570
Synedra acus
7.8e-19
97.8
374
25.1
tho17940
Thalassiosira oceanica
1.0e-18
97.4
953
20.8
FBgn0035942
Drosophila melanogaster
3.9e-18
95.5
646
22.4
gsu123710
Galdieria sulphuraria
3.9e-18
95.5
498
23.1
ccr38100
Chondrus crispus
8.6e-18
94.4
722
21.1
tps45010
Thalassiosira pseudonana
1.1e-17
94.0
509
23.6
fso54790
Fistulifera solaris
2.5e-17
92.8
515
21.4
tho254100
Thalassiosira oceanica
5.6e-17
91.7
753
21.0
CM16G03470
Cyanidioschyzon merolae
7.3e-17
91.3
444
24.5
sya00G176930
Synedra acus
7.3e-17
91.3
516
23.8
PSNMU-V1.4_AUG-EV-PASAV3_0014890
Pseudo-nitzschia multistriata
1.2e-16
90.5
427
24.4
pte111680
Paramecium tetraurelia
1.6e-16
90.1
506
21.3
Sro797_g203890
Seminavis robusta
1.6e-16
90.1
656
21.0
gsu24520
Galdieria sulphuraria
2.8e-16
89.4
646
21.4
YBL076C
Saccharomyces cerevisiae strain S288C
2.8e-16
89.4
550
21.6
gsu07450
Galdieria sulphuraria
6.1e-16
88.2
519
21.6
SPBC8D2.06
Schizosaccharomyces pombe
6.1e-16
88.2
625
21.1
tps07210
Thalassiosira pseudonana
6.1e-16
88.2
773
21.1
pte141810
Paramecium tetraurelia
1.4e-15
87.0
196
29.1
emh527880
Emiliania huxleyi
2.3e-15
86.3
526
20.7
emh230200
Emiliania huxleyi
2.3e-15
86.3
526
20.7
fso05990
Fistulifera solaris
3.1e-15
85.9
374
24.3
Pp3c16_16950
Physcomitrella patens
6.8e-15
84.7
187
29.9
ENSG00000137411
Homo sapiens
8.9e-15
84.3
404
25.0
ENSG00000236178
Homo sapiens
8.9e-15
84.3
404
25.0
ENSG00000230985
Homo sapiens
8.9e-15
84.3
404
25.0
ENSG00000223494
Homo sapiens
8.9e-15
84.3
404
25.0
ENSG00000234032
Homo sapiens
8.9e-15
84.3
404
25.0
ENSG00000206476
Homo sapiens
8.9e-15
84.3
404
25.0
CM20G02800
Cyanidioschyzon merolae
4.4e-14
82.0
199
29.6
pte629670
Paramecium tetraurelia
4.4e-14
82.0
525
20.4
WBGene00002153
Caenorhabditis elegans
5.8e-14
81.6
475
20.8
CC00G37100
Cyclotella cryptica
9.8e-14
80.9
650
21.4
FBgn0027086
Drosophila melanogaster
1.7e-13
80.1
635
22.7
ENSG00000196305
Homo sapiens
6.4e-13
78.2
181
28.7
ptri50090
Phaeodactylum tricornutum
1.4e-12
77.0
502
22.7
sya00G254320
Synedra acus
4.1e-12
75.5
652
21.8
Naga_100031g22
Nannochloropsis gaditana
7.0e-12
74.7
192
25.0
Ec-06_008740
Ectocarpus siliculosus
9.2e-12
74.3
173
26.6
Cre16.g651750
Chlamydomonas reinhardtii
1.2e-11
73.9
187
26.2
gene11203
Fragilariopsis cylindrus
1.2e-11
73.9
186
26.9
gene4331
Fragilariopsis cylindrus
1.2e-11
73.9
186
26.9
ps00G03650
Pseudo-nitzschia multiseries
2.7e-11
72.8
659
20.8
WBGene00002152
Caenorhabditis elegans
6.0e-11
71.6
185
25.9
AA0063G00150
Aureococcus anophagefferens
7.8e-11
71.2
184
26.1
fso84280
Fistulifera solaris
1.7e-10
70.1
175
26.9
ENSG00000133706
Homo sapiens
2.3e-10
69.7
324
22.2
AT4G10320
Arabidopsis thaliana
2.5e-09
66.2
181
24.3
fso169920
Fistulifera solaris
4.3e-09
65.5
186
26.3
Naga_100017g76
Nannochloropsis gaditana
4.3e-09
65.5
177
26.6
SPCC18B5.08c
Schizosaccharomyces pombe
4.3e-09
65.5
148
28.4
sya00G205820
Synedra acus
7.3e-09
64.7
159
29.6
tho95740
Thalassiosira oceanica
9.5e-09
64.3
157
30.6
pte699740
Paramecium tetraurelia
1.2e-08
63.9
224
24.6
Sro58_g033840
Seminavis robusta
1.2e-08
63.9
190
24.7
Pp3s46_440
Physcomitrella patens
1.6e-08
63.5
631
21.2
gene7219
Fragilariopsis cylindrus
2.1e-08
63.2
190
27.4
sya00G181490
Synedra acus
3.6e-08
62.4
181
24.3
fso153940
Fistulifera solaris
6.2e-08
61.6
218
23.9
PSNMU-V1.4_AUG-EV-PASAV3_0027360
Pseudo-nitzschia multistriata
6.2e-08
61.6
160
28.1
AT1G09620
Arabidopsis thaliana
1.1e-07
60.8
87
35.6
fso101450
Fistulifera solaris
1.1e-07
60.8
196
24.5
ps00G178810
Pseudo-nitzschia multiseries
1.1e-07
60.8
157
28.0
tho545080
Thalassiosira oceanica
3.1e-07
59.3
57
43.9
tps27770
Thalassiosira pseudonana
5.2e-07
58.5
182
28.0
ptri88940
Phaeodactylum tricornutum
8.9e-07
57.8
156
24.4
WBGene00003073
Caenorhabditis elegans
5.8e-06
55.1
206
21.4
Ec-16_002540
Ectocarpus siliculosus
5.8e-06
55.1
174
25.9
ccr37660
Chondrus crispus
9.8e-06
54.3
184
23.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (6 genes)
Thalassiosira pseudonana (5 genes)
Thalassiosira oceanica (6 genes)
Pseudo-nitzschia multiseries (5 genes)
Fistulifera solaris (12 genes)
Fragilariopsis cylindrus (6 genes)
Cyclotella cryptica (4 genes)
Aureococcus anophagefferens (3 genes)
Ectocarpus siliculosus (3 genes)
Nannochloropsis gaditana (4 genes)
Homo sapiens (9 genes)
Drosophila melanogaster (5 genes)
Caenorhabditis elegans (5 genes)
Saccharomyces cerevisiae strain S288C (2 genes)
Schizosaccharomyces pombe (5 genes)
Arabidopsis thaliana (4 genes)
Cyanidioschyzon merolae (4 genes)
Chondrus crispus (4 genes)
Galdieria sulphuraria (7 genes)
Emiliania huxleyi (6 genes)
Paramecium tetraurelia (5 genes)
Seminavis robusta (5 genes)
Synedra acus (10 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (4 genes)
Pseudo-nitzschia multistriata (4 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing