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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G20540
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G20540
Arabidopsis thaliana
0.0e+00
2066.6
1050
100.0
AT1G50840
Arabidopsis thaliana
0.0e+00
1434.9
1071
70.5
Pp3c24_16390
Physcomitrella patens
5.8e-262
905.6
829
57.7
Pp3c14_14550
Physcomitrella patens
5.4e-260
899.0
870
55.9
Pp3c8_21620
Physcomitrella patens
9.9e-238
825.1
806
54.6
tps70040
Thalassiosira pseudonana
5.0e-181
636.7
808
45.5
ps00G195800
Pseudo-nitzschia multiseries
5.4e-175
616.7
811
45.5
gene17026
Fragilariopsis cylindrus
5.0e-173
610.1
810
45.6
CM15G02700
Cyanidioschyzon merolae
3.0e-170
600.9
778
45.8
Ec-02_003280
Ectocarpus siliculosus
3.0e-170
600.9
876
42.8
AA0012G01990
Aureococcus anophagefferens
1.4e-162
575.5
816
43.4
CC00G55700
Cyclotella cryptica
8.9e-162
572.8
909
40.9
emh585070
Emiliania huxleyi
6.4e-160
566.6
834
41.2
ccr16480
Chondrus crispus
1.4e-159
565.5
824
41.9
fso06220
Fistulifera solaris
5.4e-159
563.5
922
40.8
Sro2579_g331800
Seminavis robusta
1.2e-158
562.4
987
38.3
fso51450
Fistulifera solaris
1.0e-157
559.3
923
40.0
ptri224060
Phaeodactylum tricornutum
5.0e-157
557.0
916
40.9
sya00G18350
Synedra acus
1.2e-155
552.4
887
41.4
pte131730
Paramecium tetraurelia
6.2e-155
550.1
866
39.0
pte586380
Paramecium tetraurelia
1.1e-154
549.3
866
39.0
emh369160
Emiliania huxleyi
2.3e-133
478.4
859
37.8
PSNMU-V1.4_AUG-EV-PASAV3_0102480
Pseudo-nitzschia multistriata
3.9e-133
477.6
788
39.3
Cre08.g363837
Chlamydomonas reinhardtii
1.2e-118
429.5
1112
31.1
tho69460
Thalassiosira oceanica
1.8e-106
389.0
682
38.7
sya00G103470
Synedra acus
7.0e-34
147.9
304
33.2
CM20G04620
Cyanidioschyzon merolae
5.2e-29
131.7
338
29.9
WBGene00020964
Caenorhabditis elegans
3.7e-27
125.6
300
29.0
ccr162300
Chondrus crispus
4.1e-26
122.1
291
28.2
CC00G57950
Cyclotella cryptica
1.5e-23
113.6
397
28.2
tps177080
Thalassiosira pseudonana
5.6e-23
111.7
349
26.9
Ec-04_005890
Ectocarpus siliculosus
7.3e-23
111.3
443
24.4
Naga_100120g21
Nannochloropsis gaditana
7.1e-18
94.7
280
29.6
FBgn0002905
Drosophila melanogaster
1.6e-17
93.6
315
27.3
Cre16.g664301
Chlamydomonas reinhardtii
3.5e-17
92.4
276
27.2
Cre17.g736150
Chlamydomonas reinhardtii
6.0e-17
91.7
380
25.8
AT4G32700
Arabidopsis thaliana
1.1e-15
87.4
330
26.4
ENSG00000051341
Homo sapiens
1.6e-14
83.6
275
27.3
Pp3c5_12930
Physcomitrella patens
1.1e-13
80.9
317
27.1
ENSG00000130997
Homo sapiens
2.4e-13
79.7
327
24.2
gsu103370
Galdieria sulphuraria
1.3e-11
73.9
243
26.3
tho647340
Thalassiosira oceanica
4.2e-10
68.9
84
39.3
emh673380
Emiliania huxleyi
2.7e-09
66.2
161
32.3
Cre06.g257800
Chlamydomonas reinhardtii
3.9e-08
62.4
204
28.9
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (3 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (1 genes)
Synedra acus (2 genes)
Physcomitrella patens (4 genes)
Chlamydomonas reinhardtii (4 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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