Gene: AT3G20540 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G20540
Transcript Identifier
AT3G20540.2
Gene Type
Coding gene
Location
3 : 7168261-7173357 : positive

Family Information

Homologous gene family
HOM02SEM001565
(37 genes in 20 species)
specific family
Duplication type
Block duplicate

Descriptions

Curated Summary
Encodes an organellar DNA polymerase I that is also involved in double strand break repair.
Show more...

Identifiers

Type Value
aliasPolIB
aliasPOLGAMMA1
aliaspolymerase I B
aliaspolymerase gamma 1

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006260
ISS
Gene OntologyDNA replication1
GO:0006260
IEA
InterProDNA replication
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0006261
IEA
InterProDNA-dependent DNA replication
GO:0006264
IMP
Gene Ontologymitochondrial DNA replication2 3 4 5
GO:0033259
IMP
Gene Ontologyplastid DNA replication2 3
GO:0006302
IMP
Gene Ontologydouble-strand break repair2 3
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process ENSG00000130997
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process ENSG00000130997
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process ENSG00000130997
GO:0006310
IEA
PLAZA Integrative OrthologyDNA recombination ENSG00000130997
GO:0000724
IEA
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination ENSG00000130997
GO:0000725
IEA
PLAZA Integrative Orthologyrecombinational repair ENSG00000130997
GO:0019985
IEA
PLAZA Integrative Orthologytranslesion synthesis ENSG00000130997
GO:0071897
IEA
PLAZA Integrative OrthologyDNA biosynthetic process ENSG00000130997
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process ENSG00000130997
GO:0006301
IEA
PLAZA Integrative Orthologypostreplication repair ENSG00000130997
GO:0000731
IEA
PLAZA Integrative OrthologyDNA synthesis involved in DNA repair ENSG00000130997
GO:0036297
IEA
PLAZA Integrative Orthologyinterstrand cross-link repair ENSG00000130997
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process ENSG00000130997

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
ISS
Gene OntologyDNA binding1
GO:0003677
IEA
InterProDNA binding
GO:0003887
ISS
Gene OntologyDNA-directed DNA polymerase activity1
GO:0003887
IEA
InterProDNA-directed DNA polymerase activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0030332
IEA
PLAZA Integrative Orthologycyclin binding ENSG00000130997
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000130997

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IDA, IMP
Gene Ontologymitochondrion4 5 6 7
GO:0009295
IDA
Gene Ontologynucleoid8 9
GO:0009507
IDA
Gene Ontologychloroplast6 7
GO:0005634
ISM
Gene Ontologynucleus10
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen ENSG00000130997
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen ENSG00000130997
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part ENSG00000130997
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part ENSG00000130997
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle ENSG00000130997
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen ENSG00000130997
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part ENSG00000130997
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen ENSG00000130997
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000130997
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle ENSG00000130997
GO:0005730
IEA
PLAZA Integrative Orthologynucleolus ENSG00000130997

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR012337Ribonuclease H-like superfamily
IPR001098DNA-directed DNA polymerase, family A, palm domain
IPR0025623'-5' exonuclease domain
IPR002298DNA polymerase A

No MapMan annotations defined for this gene.
KeggID Description
K02335polA; DNA polymerase I [EC:2.7.7.7]
No chloroplast target sequence found.