Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G09350
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G09350
Arabidopsis thaliana
2.2e-200
699.5
364
100.0
AT5G02150
Arabidopsis thaliana
1.4e-127
457.6
324
74.1
AT3G53800
Arabidopsis thaliana
6.7e-109
395.6
363
57.9
Pp3c5_26180
Physcomitrella patens
9.1e-106
385.2
372
55.4
Pp3c16_19440
Physcomitrella patens
5.9e-81
302.8
369
45.8
Cre09.g397512
Chlamydomonas reinhardtii
3.0e-24
114.4
236
33.9
Sro17_g012450
Seminavis robusta
4.9e-19
97.1
288
29.9
AT3G51980
Arabidopsis thaliana
3.0e-16
87.8
311
28.0
CC00G150860
Cyclotella cryptica
5.1e-16
87.0
294
29.9
fso30930
Fistulifera solaris
1.6e-14
82.0
265
29.8
fso119110
Fistulifera solaris
4.8e-14
80.5
223
30.9
gene18463
Fragilariopsis cylindrus
8.2e-14
79.7
337
26.1
tps180090
Thalassiosira pseudonana
3.1e-13
77.8
311
26.0
ptri100880
Phaeodactylum tricornutum
9.0e-13
76.3
351
27.6
tho329960
Thalassiosira oceanica
1.2e-12
75.9
333
27.3
ENSG00000133265
Homo sapiens
1.7e-11
72.0
286
24.8
pte37720
Paramecium tetraurelia
2.2e-11
71.6
218
29.4
Cre07.g323500
Chlamydomonas reinhardtii
5.5e-10
67.0
215
27.0
gsu68130
Galdieria sulphuraria
2.1e-09
65.1
173
31.2
gsu82640
Galdieria sulphuraria
8.8e-08
59.7
223
24.7
YBR101C
Saccharomyces cerevisiae strain S288C
1.1e-07
59.3
221
27.6
SPBC3B9.01
Schizosaccharomyces pombe
1.1e-07
59.3
159
30.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (4 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (1 genes)
Synedra acus (0 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing