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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT1G57800
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT1G57800
Arabidopsis thaliana
0.0e+00
1273.1
661
100.0
AT1G57820
Arabidopsis thaliana
1.4e-269
930.2
659
73.6
AT5G39550
Arabidopsis thaliana
1.2e-212
741.1
613
64.6
AT1G66040
Arabidopsis thaliana
3.0e-208
726.5
604
64.9
AT1G66050
Arabidopsis thaliana
3.3e-207
723.0
603
64.7
Pp3c3_20850
Physcomitrella patens
1.1e-178
628.2
614
53.1
Pp3c10_16970
Physcomitrella patens
2.2e-174
614.0
614
52.0
AT4G08590
Arabidopsis thaliana
7.1e-117
422.9
476
49.2
Cre03.g163850
Chlamydomonas reinhardtii
3.2e-77
291.2
659
30.7
ENSG00000147854
Homo sapiens
5.8e-42
174.1
391
32.5
ENSG00000276043
Homo sapiens
8.3e-41
170.2
425
32.0
AT2G22740
Arabidopsis thaliana
5.1e-14
81.3
156
34.0
Pp3c12_13280
Physcomitrella patens
8.1e-12
73.9
138
35.5
AT2G35160
Arabidopsis thaliana
1.1e-11
73.6
159
31.4
AT5G13960
Arabidopsis thaliana
1.1e-11
73.6
117
36.8
Pp3c20_6140
Physcomitrella patens
1.5e-10
69.7
97
41.2
Pp3c4_9720
Physcomitrella patens
1.5e-10
69.7
179
33.0
AT2G33290
Arabidopsis thaliana
1.4e-08
63.2
158
31.0
emh735330
Emiliania huxleyi
7.1e-08
60.8
94
41.5
AT4G13460
Arabidopsis thaliana
1.2e-07
60.1
140
33.6
AT5G04940
Arabidopsis thaliana
2.7e-07
58.9
166
28.9
Cre02.g089200
Chlamydomonas reinhardtii
4.6e-07
58.2
107
39.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (12 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (5 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
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