Gene: AT1G57800 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G57800
Transcript Identifier
AT1G57800.1
Gene Type
Coding gene
Location
1 : 21408747-21412283 : negative

Family Information

Homologous gene family
HOM02SEM006572
(13 genes in 5 species)
specific family
Orthologous gene family
ORTHO02SEM006142
(13 genes in 5 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
zinc finger (C3HC4-type RING finger) family protein
Curated Summary
predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH3/VIM5 cDNA through RT-PCR were unsuccessful and only one Arabidopsis EST is associated with this locus. A paternally expressed imprinted gene.
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Identifiers

Type Value
uniprotQ9FVS2
aliasVARIANT IN METHYLATION 5
aliasVIM5
aliasORTH3
aliasORTHRUS 3

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process AT5G39550
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process AT5G39550
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process AT5G39550
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process ENSG00000147854
GO:0000003
IEA
PLAZA Integrative Orthologyreproduction AT5G39550
GO:0009987
IEA
PLAZA Integrative Orthologycellular process AT5G39550
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT5G39550
GO:0044267
IEA
PLAZA Integrative Orthologycellular protein metabolic process AT5G39550
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated AT5G39550
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process AT5G39550
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process AT5G39550
GO:0097549
IEA
PLAZA Integrative Orthologychromatin organization involved in negative regulation of transcription AT5G39550
GO:0044260
IEA
PLAZA Integrative Orthologycellular macromolecule metabolic process AT5G39550
GO:0006338
IEA
PLAZA Integrative Orthologychromatin remodeling AT1G57820
GO:0043170
IEA
PLAZA Integrative Orthologymacromolecule metabolic process AT5G39550
GO:0006346
IEA
PLAZA Integrative Orthologymethylation-dependent chromatin silencing AT5G39550
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process AT5G39550
GO:0006342
IEA
PLAZA Integrative Orthologychromatin silencing AT5G39550
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process AT5G39550
GO:0006464
IEA
PLAZA Integrative Orthologycellular protein modification process AT5G39550
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development AT5G39550
GO:0033043
IEA
PLAZA Integrative Orthologyregulation of organelle organization AT5G39550
GO:0033044
IEA
PLAZA Integrative Orthologyregulation of chromosome organization AT5G39550
GO:0019538
IEA
PLAZA Integrative Orthologyprotein metabolic process AT5G39550
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process AT5G39550
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis AT5G39550
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization AT5G39550
GO:0006807
IEA
PLAZA Integrative Orthologynitrogen compound metabolic process AT5G39550
GO:0048731
IEA
PLAZA Integrative Orthologysystem development AT5G39550
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression AT5G39550
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process AT5G39550
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process AT5G39550
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process AT5G39550
GO:0006259
IEA
PLAZA Integrative OrthologyDNA metabolic process AT5G39550
GO:0048608
IEA
PLAZA Integrative Orthologyreproductive structure development AT5G39550
GO:0070647
IEA
PLAZA Integrative Orthologyprotein modification by small protein conjugation or removal AT5G39550
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process AT5G39550
GO:0044238
IEA
PLAZA Integrative Orthologyprimary metabolic process AT5G39550
GO:0060968
IEA
PLAZA Integrative Orthologyregulation of gene silencing AT5G39550
GO:0022607
IEA
PLAZA Integrative Orthologycellular component assembly AT1G57820
GO:0036211
IEA
PLAZA Integrative Orthologyprotein modification process AT5G39550
GO:0032259
IEA
PLAZA Integrative Orthologymethylation AT5G39550
GO:0051276
IEA
PLAZA Integrative Orthologychromosome organization AT5G39550
GO:0006306
IEA
PLAZA Integrative OrthologyDNA methylation AT5G39550
GO:0006305
IEA
PLAZA Integrative OrthologyDNA alkylation AT5G39550
GO:0043414
IEA
PLAZA Integrative Orthologymacromolecule methylation AT5G39550
GO:0040029
IEA
PLAZA Integrative Orthologyregulation of gene expression, epigenetic AT5G39550
GO:0043412
IEA
PLAZA Integrative Orthologymacromolecule modification AT5G39550
GO:0016458
IEA
PLAZA Integrative Orthologygene silencing AT5G39550
GO:0031055
IEA
PLAZA Integrative Orthologychromatin remodeling at centromere AT1G57820
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process AT5G39550
GO:0006304
IEA
PLAZA Integrative OrthologyDNA modification AT5G39550
GO:0008283
IEA
PLAZA Integrative Orthologycell proliferation ENSG00000147854
GO:0031508
IEA
PLAZA Integrative Orthologypericentric heterochromatin assembly AT1G57820
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process AT5G39550
GO:0031507
IEA
PLAZA Integrative Orthologyheterochromatin assembly AT1G57820
GO:0051130
IEA
PLAZA Integrative Orthologypositive regulation of cellular component organization AT5G39550
GO:0051253
IEA
PLAZA Integrative Orthologynegative regulation of RNA metabolic process AT5G39550
GO:0045934
IEA
PLAZA Integrative Orthologynegative regulation of nucleobase-containing compound metabolic process AT5G39550
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process AT5G39550
GO:0006333
IEA
PLAZA Integrative Orthologychromatin assembly or disassembly AT1G57820
GO:0090068
IEA
PLAZA Integrative Orthologypositive regulation of cell cycle process ENSG00000147854
GO:0045935
IEA
PLAZA Integrative Orthologypositive regulation of nucleobase-containing compound metabolic process AT5G39550
GO:0045814
IEA
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic AT5G39550
GO:0044728
IEA
PLAZA Integrative OrthologyDNA methylation or demethylation AT5G39550
GO:0051128
IEA
PLAZA Integrative Orthologyregulation of cellular component organization AT5G39550
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process AT5G39550
GO:0006323
IEA
PLAZA Integrative OrthologyDNA packaging AT1G57820
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process AT5G39550
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process AT5G39550
GO:0006325
IEA
PLAZA Integrative Orthologychromatin organization AT5G39550
GO:1902275
IEA
PLAZA Integrative Orthologyregulation of chromatin organization AT5G39550
GO:0010564
IEA
PLAZA Integrative Orthologyregulation of cell cycle process ENSG00000147854
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process AT5G39550
GO:0071103
IEA
PLAZA Integrative OrthologyDNA conformation change AT1G57820
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation ENSG00000147854
GO:0007049
IEA
PLAZA Integrative Orthologycell cycle ENSG00000147854
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization AT5G39550
GO:0022414
IEA
PLAZA Integrative Orthologyreproductive process AT5G39550
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process AT5G39550
GO:0051865
IEA
PLAZA Integrative Orthologyprotein autoubiquitination ENSG00000147854
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process AT5G39550
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process AT5G39550
GO:0010558
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule biosynthetic process AT5G39550
GO:0034401
IEA
PLAZA Integrative Orthologychromatin organization involved in regulation of transcription AT5G39550
GO:0031497
IEA
PLAZA Integrative Orthologychromatin assembly AT1G57820
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process AT5G39550
GO:0031937
IEA
PLAZA Integrative Orthologypositive regulation of chromatin silencing AT5G39550
GO:0031935
IEA
PLAZA Integrative Orthologyregulation of chromatin silencing AT5G39550
GO:1903507
IEA
PLAZA Integrative Orthologynegative regulation of nucleic acid-templated transcription AT5G39550
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription AT5G39550
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process AT5G39550
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development AT5G39550
GO:0070828
IEA
PLAZA Integrative Orthologyheterochromatin organization AT1G57820
GO:0016567
IEA
PLAZA Integrative Orthologyprotein ubiquitination AT5G39550
GO:0090309
IEA
PLAZA Integrative Orthologypositive regulation of methylation-dependent chromatin silencing AT5G39550
GO:0090308
IEA
PLAZA Integrative Orthologyregulation of methylation-dependent chromatin silencing AT5G39550
GO:0010228
IEA
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT5G39550
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process AT5G39550
GO:0010467
IEA
PLAZA Integrative Orthologygene expression AT5G39550
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression AT5G39550
GO:0051054
IEA
PLAZA Integrative Orthologypositive regulation of DNA metabolic process AT5G39550
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process AT5G39550
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process AT5G39550
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process AT5G39550
GO:0051726
IEA
PLAZA Integrative Orthologyregulation of cell cycle ENSG00000147854
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis AT1G57820
GO:0003006
IEA
PLAZA Integrative Orthologydevelopmental process involved in reproduction AT5G39550
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process AT5G39550
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process AT5G39550
GO:0051052
IEA
PLAZA Integrative Orthologyregulation of DNA metabolic process AT5G39550
GO:0051172
IEA
PLAZA Integrative Orthologynegative regulation of nitrogen compound metabolic process AT5G39550
GO:2001252
IEA
PLAZA Integrative Orthologypositive regulation of chromosome organization AT5G39550
GO:0016569
IEA
PLAZA Integrative Orthologycovalent chromatin modification AT5G39550
GO:0007050
IEA
PLAZA Integrative Orthologycell cycle arrest ENSG00000147854
GO:0031324
IEA
PLAZA Integrative Orthologynegative regulation of cellular metabolic process AT5G39550
GO:0032776
IEA
PLAZA Integrative OrthologyDNA methylation on cytosine AT5G39550
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process AT5G39550
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process AT5G39550
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process AT5G39550
GO:0071704
IEA
PLAZA Integrative Orthologyorganic substance metabolic process AT5G39550
GO:0071824
IEA
PLAZA Integrative Orthologyprotein-DNA complex subunit organization AT1G57820
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process AT5G39550
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process AT5G39550
GO:0031327
IEA
PLAZA Integrative Orthologynegative regulation of cellular biosynthetic process AT5G39550
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process AT5G39550
GO:0043933
IEA
PLAZA Integrative Orthologyprotein-containing complex subunit organization AT1G57820
GO:0071158
IEA
PLAZA Integrative Orthologypositive regulation of cell cycle arrest ENSG00000147854
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process AT5G39550
GO:0010638
IEA
PLAZA Integrative Orthologypositive regulation of organelle organization AT5G39550
GO:0071156
IEA
PLAZA Integrative Orthologyregulation of cell cycle arrest ENSG00000147854
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process AT5G39550
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process AT5G39550
GO:0051301
IEA
PLAZA Integrative Orthologycell division AT1G57820
GO:0045787
IEA
PLAZA Integrative Orthologypositive regulation of cell cycle ENSG00000147854
GO:0045786
IEA
PLAZA Integrative Orthologynegative regulation of cell cycle ENSG00000147854
GO:0009890
IEA
PLAZA Integrative Orthologynegative regulation of biosynthetic process AT5G39550
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process AT5G39550
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process AT5G39550
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process AT5G39550
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process AT5G39550
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process AT5G39550
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription AT5G39550
GO:0010424
IEA
PLAZA Integrative OrthologyDNA methylation on cytosine within a CG sequence AT5G39550
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process AT5G39550
GO:0065004
IEA
PLAZA Integrative Orthologyprotein-DNA complex assembly AT1G57820
GO:0065003
IEA
PLAZA Integrative Orthologyprotein-containing complex assembly AT1G57820
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation AT5G39550
GO:0032446
IEA
PLAZA Integrative Orthologyprotein modification by small protein conjugation AT5G39550
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process AT5G39550
GO:0034622
IEA
PLAZA Integrative Orthologycellular protein-containing complex assembly AT1G57820
GO:2000113
IEA
PLAZA Integrative Orthologynegative regulation of cellular macromolecule biosynthetic process AT5G39550
GO:0045892
IEA
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT5G39550
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process AT5G39550
GO:0034508
IEA
PLAZA Integrative Orthologycentromere complex assembly AT1G57820
GO:1902679
IEA
PLAZA Integrative Orthologynegative regulation of RNA biosynthetic process AT5G39550
GO:0061458
IEA
PLAZA Integrative Orthologyreproductive system development AT5G39550
GO:0022402
IEA
PLAZA Integrative Orthologycell cycle process ENSG00000147854
GO:0009791
IEA
PLAZA Integrative Orthologypost-embryonic development AT5G39550
GO:1905269
IEA
PLAZA Integrative Orthologypositive regulation of chromatin organization AT5G39550

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042393
IEA
InterProhistone binding
GO:0046872
IEA
InterPrometal ion binding
GO:0005515
IEA
InterProprotein binding
GO:0008270
ISS
Gene Ontologyzinc ion binding1
GO:0008270
IEA
InterProzinc ion binding
GO:0004842
IEA
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT5G39550
GO:0019789
IEA
PLAZA Integrative OrthologySUMO transferase activity ENSG00000147854
GO:0019787
IEA
PLAZA Integrative Orthologyubiquitin-like protein transferase activity AT5G39550
GO:1901265
IEA
PLAZA Integrative Orthologynucleoside phosphate binding AT5G39550
GO:0140096
IEA
PLAZA Integrative Orthologycatalytic activity, acting on a protein AT5G39550
GO:0003824
IEA
PLAZA Integrative Orthologycatalytic activity AT5G39550
GO:0061630
IEA
PLAZA Integrative Orthologyubiquitin protein ligase activity ENSG00000147854
GO:0036094
IEA
PLAZA Integrative Orthologysmall molecule binding AT5G39550
GO:0010385
IEA
PLAZA Integrative Orthologydouble-stranded methylated DNA binding AT1G57820
GO:0097159
IEA
PLAZA Integrative Orthologyorganic cyclic compound binding AT5G39550
GO:0043565
IEA
PLAZA Integrative Orthologysequence-specific DNA binding AT5G39550
GO:0061659
IEA
PLAZA Integrative Orthologyubiquitin-like protein ligase activity ENSG00000147854
GO:0016740
IEA
PLAZA Integrative Orthologytransferase activity AT5G39550
GO:0003677
IEA
PLAZA Integrative OrthologyDNA binding AT5G39550
GO:0003676
IEA
PLAZA Integrative Orthologynucleic acid binding AT5G39550
GO:0003682
IEA
PLAZA Integrative Orthologychromatin binding AT1G57820
GO:0000166
IEA
PLAZA Integrative Orthologynucleotide binding AT5G39550
GO:0008327
IEA
PLAZA Integrative Orthologymethyl-CpG binding AT5G39550
GO:1901363
IEA
PLAZA Integrative Orthologyheterocyclic compound binding AT5G39550
GO:0010429
IEA
PLAZA Integrative Orthologymethyl-CpNpN binding AT5G39550
GO:0010428
IEA
PLAZA Integrative Orthologymethyl-CpNpG binding AT5G39550
GO:0003690
IEA
PLAZA Integrative Orthologydouble-stranded DNA binding AT1G57820

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus2
GO:0010369
IEA
PLAZA Integrative Orthologychromocenter AT1G57820
GO:0098687
IEA
PLAZA Integrative Orthologychromosomal region AT1G57820
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen ENSG00000147854
GO:0005694
IEA
PLAZA Integrative Orthologychromosome AT1G57820
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen ENSG00000147854
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen ENSG00000147854
GO:0044427
IEA
PLAZA Integrative Orthologychromosomal part AT1G57820
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part AT1G57820
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part ENSG00000147854
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000147854
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm AT4G08590
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part AT1G57820
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle AT1G57820
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen ENSG00000147854
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle AT1G57820

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR003105SRA-YDG
IPR027370RING-type zinc-finger, LisH dimerisation motif
IPR018957Zinc finger, C3HC4 RING-type
IPR019786Zinc finger, PHD-type, conserved site
IPR017907Zinc finger, RING-type, conserved site
IPR001841Zinc finger, RING-type
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type
IPR015947PUA-like superfamily

No MapMan annotations defined for this gene.
KeggID Description
K07454K07454; putative restriction endonuclease
K11420EHMT; euchromatic histone-lysine N-methyltransferase [EC:2.1.1.43]
K10638UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1
No chloroplast target sequence found.