Functional Species Clusters

Cluster id E-value Cluster size Chromosome Identifier Description
CH_zma-b104_1 0.00000000000000239757 8 scaffold8.1958 50.4.3 Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen lyase
CH_zma-b104_10 0.000000267041 4 scaffold4.185 21.3.1.2.1 Cell wall organisation.pectin.homogalacturonan.modification and degradation.pectin methylesterase
CH_zma-b104_11 0.000000557364 3 scaffold6.1878 18.1.3.1 Protein modification.glycosylation.C-linked glycosylation.C-glucosyltransferase (CGT)
CH_zma-b104_12 0.00000487768 3 scaffold5.3054 27.3.3 Multi-process regulation.SnRK1-kinase regulatory system.SnRK1-interacting factor (FLZ)
CH_zma-b104_13 0.00000606656 21 scaffold6.1432 35.2 not assigned.not annotate
CH_zma-b104_14 0.0000194899 3 scaffold1.2652 27.7.3.4 Multi-process regulation.calcium-dependent signalling.SnRK2-interacting calcium sensor activities.SRC2-clade calcium sensor
CH_zma-b104_15 0.0000198755 4 scaffold2.2587 1.1.8.1 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex
CH_zma-b104_16 0.0000306597 3 scaffold1.2887 17.7.2.1 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome
CH_zma-b104_17 0.0000311755 3 scaffold2.3108 18.4.1.17 Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (DUF26)
CH_zma-b104_18 0.0000397968 3 scaffold9.309 17.1.1.7 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.RNA endonuclease (FCF1)
CH_zma-b104_19 0.0000709041 5 scaffold5.3240 17.7.2 Protein biosynthesis.organelle machinery.plastidial ribosome
CH_zma-b104_2 0.0000000000163118 5 scaffold3.2168 18.3.4.1.1.6 Protein modification.lipidation.glycophosphatidylinositol (GPI) anchor addition.GPI pre-assembly.GPI N-acetylglucosamine transferase complex.component PIG-Y
CH_zma-b104_20 0.0000780428 3 scaffold10.1912 19.4.3.1 Protein homeostasis.proteolysis.aspartic-type peptidase activities.A1-class protease (Pepsin)
CH_zma-b104_21 0.0000917828 3 scaffold6.56 24.2.3.4.2 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (LHT)
CH_zma-b104_22 0.000138779 26 scaffold6.122 35.2 not assigned.not annotate
CH_zma-b104_23 0.000304785 2 scaffold1.4046 16.4.2.1.2.5 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT3/5
CH_zma-b104_24 0.000304785 2 scaffold8.1812 11.10.1.11.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.IMA/FEP-peptide activity.IMA/FEP precursor polypeptide
CH_zma-b104_25 0.000304785 2 scaffold10.2339 22.3.4.3.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase guanyl-nucleotide exchange.RAB-H1 GTPase nucleotide exchange factor (LOT)
CH_zma-b104_26 0.000304785 2 scaffold6.1405 23.4.1.5.2 Protein translocation.peroxisome.importomer translocation system.receptor export system.PEX1-PEX6 membrane anchor component PEX26
CH_zma-b104_27 0.000304785 2 scaffold3.2113 24.1.3.1.3 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter
CH_zma-b104_28 0.000304785 2 scaffold4.1881 13.4.5.3 Cell cycle organisation.cytokinesis.endoplasmic reticulum (ER) reorganisation.regulatory E3 ubiquitin protein ligase (LUNAPARK)
CH_zma-b104_29 0.000304785 2 scaffold8.1927 15.5.49.3 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC
CH_zma-b104_3 0.00000000042482 4 scaffold1.2866 5.7.2.2.3 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A2 activities.phospholipase A2 (pPLA2-II)
CH_zma-b104_30 0.000304785 2 scaffold5.2628 20.3.2.1 Cytoskeleton organisation.actin and tubulin folding.Prefoldin co-chaperone complex.component PFD1
CH_zma-b104_31 0.000304785 2 scaffold2.3078 27.11.1.1 Multi-process regulation.UPR (Unfolded Protein Response) signalling.IRE1-bZIP60 pathway.bifunctional protein kinase and ribonuclease (IRE1)
CH_zma-b104_32 0.000304785 2 scaffold5.3073 10.5.2 Redox homeostasis.ascorbate-based redox regulation.monodehydroascorbate reductase (MDAR)
CH_zma-b104_33 0.000304785 2 scaffold8.1444 27.4.4 Multi-process regulation.Rop-GTPase regulatory system.guanine nucleotide dissociation inhibitor (RopGDI)
CH_zma-b104_34 0.000304785 2 scaffold1.263 50.5.1 Enzyme classification.EC_5 isomerases.EC_5.1 racemase or epimerase
CH_zma-b104_35 0.000304785 2 scaffold5.2764 7.14.3 Coenzyme metabolism.phylloquinone biosynthesis.multifunctional phylloquinone biosynthesis protein (PHYLLO)
CH_zma-b104_36 0.000664056 5 scaffold1.2887 1.1 Photosynthesis.photophosphorylation
CH_zma-b104_37 0.000739768 3 scaffold9.2425 15.5.15 RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF)
CH_zma-b104_38 0.000840259 4 scaffold2.2587 17.7.2 Protein biosynthesis.organelle machinery.plastidial ribosome
CH_zma-b104_39 0.000914216 2 scaffold2.10 15.3.3.5.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB2
CH_zma-b104_4 0.00000000127465 4 scaffold9.2393 22.4.1.5 Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-regulatory factor (ISTL)
CH_zma-b104_40 0.000914216 2 scaffold9.2511 4.1.2.2.8.6 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.valine/leucine/isoleucine aminotransferase
CH_zma-b104_41 0.000914216 2 scaffold3.200 15.3.4.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF4
CH_zma-b104_42 0.000914216 2 scaffold7.260 19.4.2.1.4 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT4)
CH_zma-b104_43 0.000914216 2 scaffold5.184 18.4.6.1 Protein modification.phosphorylation.AGC protein kinase superfamily.protein kinase (MAST)
CH_zma-b104_44 0.000914216 2 scaffold2.445 24.2.2.12 Solute transport.carrier-mediated transport.MFS superfamily.organic anion transporter (OATP)
CH_zma-b104_45 0.000914216 2 scaffold1.282 4.2.8.3 Amino acid metabolism.degradation.aromatic amino acid.aromatic amino acid decarboxylase
CH_zma-b104_46 0.000914355 2 scaffold1.4042 19.2.1.2.1.1 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.N-terminal modification.cysteine oxidase (PCO)
CH_zma-b104_47 0.000914355 2 scaffold2.3287 11.2.4.1.1 Phytohormone action.auxin.transport.polar auxin transport.auxin transporter (PIN)
CH_zma-b104_48 0.000914355 2 scaffold5.180 16.3.1.2.6 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Fip1
CH_zma-b104_49 0.000914355 2 scaffold2.3163 16.9.2.1.3 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component SERRATE
CH_zma-b104_5 0.00000000594476 4 scaffold10.1545 1.3.6.2 Photosynthesis.photorespiration.hydroxypyruvate reductase activities.non-peroxisomal hydroxypyruvate reductase (HPR)
CH_zma-b104_50 0.000914355 2 scaffold4.2046 22.3.4.7.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-III-complex-specific components.component TRAPPC11
CH_zma-b104_51 0.000914355 2 scaffold3.3689 24.1.3.2.2 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter
CH_zma-b104_52 0.000914355 2 scaffold1.4190 24.2.6.2 Solute transport.carrier-mediated transport.TOC superfamily.transport protein (TSUP)
CH_zma-b104_53 0.000914355 2 scaffold7.42 27.11.1.3 Multi-process regulation.UPR (Unfolded Protein Response) signalling.IRE1-bZIP60 pathway.regulatory mediator (SVB)
CH_zma-b104_6 0.0000000133801 6 scaffold1.4256 50.1 Enzyme classification.EC_1 oxidoreductases
CH_zma-b104_7 0.0000000169328 9 scaffold8.159 50.2.7 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group
CH_zma-b104_8 0.0000000420636 4 scaffold6.2542 50.2.1 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group
CH_zma-b104_9 0.000000139362 3 scaffold4.1881 9.2.1.1.1 Secondary metabolism.phenolics.p-coumaroyl-CoA biosynthesis.phenylalanine ammonia lyase activity.phenylalanine ammonia lyase (PAL)