Gene: vmacro21925
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro21925
- Transcript Identifier vmacro21925-RA
- Gene Type Coding gene
- Location scaffold00256_Vaccinium_macrocarpon_Stevens_v1 : 19670-29177 : negative
Gene Family Information
- ID HOM05D001878
- #Genes/#Species 350/90
- Phylogenetic origin
- ID ORTHO05D001737
- #Genes/#Species 362/91
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id vmacro21925_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to FIP2: Protein FIP2 (Arabidopsis thaliana OX=3702)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT3G24860 |
| GO:0019760 | ISO | PLAZA Integrative Orthology | glucosinolate metabolic process | AT2G44730 |
| GO:0006970 | ISO | PLAZA Integrative Orthology | response to osmotic stress | AT3G24860 |
| GO:0010555 | ISO | PLAZA Integrative Orthology | response to mannitol | AT3G24860 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT2G44730 |
| GO:0009755 | ISO | PLAZA Integrative Orthology | hormone-mediated signaling pathway | AT3G24860 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0004523 | IEA | InterPro | RNA-DNA hybrid ribonuclease activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G17060 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT2G44730 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G24860 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT4G17060 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR044730 | Ribonuclease H-like domain, plant type |
| IPR044823 | Trihelix transcription factor ASIL1/2-like |
| IPR006578 | MADF domain |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR036397 | Ribonuclease H superfamily |
| IPR002156 | Ribonuclease H domain |
| IPR044822 | Myb/SANT-like DNA-binding domain 4 |
| Mapman id | Description |
|---|---|
| 15.5.20 | RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix) |