Gene: AT5G18650

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G18650
  • Transcript Identifier AT5G18650.1
  • Gene Type Coding gene
  • Location Chr5 : 6218260-6220374 : positive

Gene Family Information

  • ID HOM05D000548
  • #Genes/#Species 997/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G18650.1
  • Alias MIEL1,MYB30-Interacting E3 Ligase 1
  • uniprot Q8VZK0

Descriptions

  • Description CHY-type/CTCHY-type/RING-type Zinc finger protein
  • Computational description CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G62970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IDA
IBA
IEA
Gene Ontologyprotein ubiquitination1 2
GO:0006952
IEA
GOA Databasedefense response
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:1901485
IDA
Gene Ontologypositive regulation of transcription factor catabolic process2
GO:1900425
IMP
Gene Ontologynegative regulation of defense response to bacterium2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity1
GO:0008134
IPI
Gene Ontologytranscription factor binding2
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037274 Zinc finger, CHY-type superfamily
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR039512 RCHY1, zinc-ribbon
IPR018957 Zinc finger, C3HC4 RING-type
IPR008913 Zinc finger, CHY-type
IPR037275 Zinc finger, CTCHY-type superfamily
IPR001841 Zinc finger, RING-type
Mapman id Description
35.1 not assigned.annotated