Gene: Cre06.g280050

General Information

Structural Information

  • Species Chlamydomonas reinhardtii
  • Gene Identifier Cre06.g280050
  • Transcript Identifier Cre06.g280050.t1.2
  • Gene Type Coding gene
  • Location chromosome_6 : 4999056-5007521 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Cre06.g280050.v5.5
  • pacid 30780017
  • alias g6513.t1
  • geneName XRN1
  • uniprot A8J1Z6

Descriptions

  • Description Single-stranded RNA 5'->3' exonuclease
  • Description Homologue of yeast Xrn1p and Rat1p, which are the cytoplasmic and the nuclear 5'->3' exoribonuclease. Tge nuclear Rat1p is involved in transcription termination by RNA polymerase II. Although several genes are found for 5'->3' exoribonuclease in other org
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0000956
IEA
GOA Databasenuclear-transcribed mRNA catabolic process
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process
GO:0006139
ISO
PLAZA Homology (enrichment)nucleobase-containing compound metabolic process HOM05D000917

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
GOA Databaseprotein binding
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004527
IEA
InterProexonuclease activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008409
IEA
GOA Database5'-3' exonuclease activity
GO:0008409
IEA
InterPro5'-3' exonuclease activity
GO:0004534
ISO
PLAZA Homology (enrichment)5'-3' exoribonuclease activity HOM05D000917

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Homology (enrichment)nucleus HOM05D000917

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004859 Putative 5-3 exonuclease
IPR041385 5'-3' exoribonuclease 1, SH3-like domain
IPR016494 5'-3' exoribonuclease 1
IPR027073 5'-3' exoribonuclease
IPR041412 Xrn1, helical domain
IPR040992 Xrn1, D1 domain
Mapman id Description
35.1 not assigned.annotated