Gene: Sopen12g030620

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g030620
  • Transcript Identifier Sopen12g030620.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 79826804-79830729 : positive

Gene Family Information

  • ID HOM05D000428
  • #Genes/#Species 1201/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g030620.1

Descriptions

  • Description polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family. | poly(A) binding protein 8 (PAB8) | CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein , RNA recognition motif, RNP-1 , Polyadenylate binding protein, human types 1, 2, 3, 4 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 ., 28 kDa ribonucleoprotein, chloroplast (28RNP) - Spinacia oleracea (Spinach)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016071
ISO
PLAZA Integrative OrthologymRNA metabolic process AT3G16380
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT2G23350
GO:0006413
ISO
PLAZA Integrative Orthologytranslational initiation AT3G16380

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G23350
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G23350

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G23350

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR003954 RNA recognition motif domain, eukaryote
IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR036053 PABC (PABP) domain
IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
Mapman id Description
17.4.2.5 Protein biosynthesis.translation initiation.mRNA loading.mRNA poly-A-tail binding factor (PABP)