Gene: Sopen12g004240

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g004240
  • Transcript Identifier Sopen12g004240.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 2802304-2811863 : positive

Gene Family Information

  • ID HOM05D000002
  • #Genes/#Species 26594/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g004240.1

Descriptions

  • Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0. | fatty acid biosynthesis 1 (FAB1) | CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase , Thiolase-like , Beta-ketoacyl synthase, C-terminal , 3-oxoacyl-(acyl-carrier-protein) synthase 2 , Beta-ketoacyl synthase, N-terminal , Thiolase-like, subgroup , Beta-ketoacyl synthase, active site | BEST Arabidopsis thaliana protein match is: 3-ketoacyl-acyl carrier protein synthase I ., Reverse transcriptase, RNA-dependent DNA polymerase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015074
IEA
InterProDNA integration
GO:0006633
IEA
InterProfatty acid biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016746
IEA
InterProacyltransferase activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0016747
IEA
InterProacyltransferase activity, transferring groups other than amino-acyl groups

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000794 Beta-ketoacyl synthase
IPR016039 Thiolase-like
IPR025724 GAG-pre-integrase domain
IPR014031 Beta-ketoacyl synthase, C-terminal
IPR012337 Ribonuclease H-like superfamily
IPR020841 Polyketide synthase, beta-ketoacyl synthase domain
IPR001878 Zinc finger, CCHC-type
IPR043502 DNA/RNA polymerase superfamily
IPR014030 Beta-ketoacyl synthase, N-terminal
IPR001584 Integrase, catalytic core
IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2
IPR036397 Ribonuclease H superfamily
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
IPR036875 Zinc finger, CCHC-type superfamily
Mapman id Description
5.1.4.2.2 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.ketoacyl-ACP synthase (ptKAS) activities.ketoacyl-ACP synthase II